Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3329g00013 ATGGAAATGTGTCATGTAGCGGTGCTGTTGTTGGTTATTTCCACCACTGTTTTCTGCCCATTGTCTCTTGCTCTCACGCAAGATGGACTCACGTTGTTGGAAATCAAAAGCAGTTTGAATGGCTCTAAGAATTTTCTCAGCAACTGGCAAGAGTCTGATGAGTCTCACTGTACATGGATTGGTATCACTTGTCATCCTGGCGAACAACGAGTTCGCTCAATAAATTTACCTTACATGCAACTGGGGGGAATTATATCTCCCAGCATTGGCAGACTCAGTAGACTACATAGATTGGCACTTCATCAGAACGACCTACATGGAATCATTCCCAATGAAATTAGCAATTGTACTGAGCTTAGAGCACTGTACTTGAGGGCTAATTATTTCCAAGGAGGTATCCCATCAGCTATTGGAAACCTTTCTTATTTACAAAAACTGGATTTATCAAGCAATTCATTAAAGGGTGCTATACCTTCTTCTATTGGCCGTCTTACACATTTGCAATTTATGAACTTGTCGACTAATTTCTTTTCTGGTGAAATCCCTGACATTGGAGTACTCAACACCTTTGAGAGTAACACGTTTATTGGGAATTTAGATCTCTGTGGGAGACAAGTTCAAAAACCATGTCGGACATCACTTTGTTTCCCTGTGGTCCTACCACATTCTGAAAGTGATGAAGTTGTAGGCAATCCCACCAAAAGATCTTCACATTACGTGAAGCGGGTGCTAATTGGTGCAATATCAACAATGGGCCTTGCACTTGTCATAATCCTTTCATTACTCTGGATTTGTTTGCTATCAAAAAAGGAAAGACTTGCTACGAGAGACACAGAAGTCAAGAAACAAGTCAATCCAGAATCAAGCACAAAACTTATTACCTTCCATGGTGATCTTCCATACACATCATCTGAGATCATAGAAAAACTGGAGTCTCTTGATGAAGACGATGTGGTAGGGTCTGGAGGATTTGGTACTGTTTACCGAATGGTGATGAATGATTGTGGTACATTTGCTGTTAAGCGGATTGATAGAAGTCGTGAAGGGTCTGATCAAGGGTTTGAAAGGGAACTAGAGATCTTGGGTAGCATCAAGCACATAAATCTAGTAAACCTGCGTGGTTACTGCAGGCTCCCTTCTACCAAGCTTCTAATATATGATTATTTGGCCTCGGGCAGCTTAGATGATATTTTGCATGAGAATACTGAACAATTTCTGAATTGGAGTACTCGCCTAAAGATAGCCTTTGGTGCTGCCCGTGGTTTAGCTTACTTGCACCATGACTGCTGCCCAAAAATTGTGCATCGTGACATAAAATCCAGCAACATCCTTCTTGATGAAAACATGGAGCCTCATGTCTCTGATTTTGGTCTTGCAAAGCTTTTGGTTGATGAAGATGCCCATGTTACAACAGTGGTTGCTGGCACATTTGGCTATTTGGCACCAGAGTATCTACAAAGTGGGAGAGCCACTGAAAAGTCAGATGTGTACAGATTTGGAGTTCTATTGCTAGAACTTGTAACTGGAAAGAAACCTACAGACCCTTCCTTCGCCAAGAGAGGCCTAAATGTTGTTGGTTGGATGAACACATTCCTGAGAGAAAACAGATTAGAAGATGTGGTAGACAAAAGATGCACTGATGCAGATTGGGGATCTGTTGAAGTAATTATTGAGCTAGCAGCAAGTTGCACAGATGCAAATGCAGATGATCGTCCATCAATGAACCAGGTATTACAGTTGCTGGAACAAGAGGTTATGTCTCCTTGCCCAAGTGATTTTTACGAGTCACATTCAGATCACTGTTAA 1806 0.4153 MEMCHVAVLLLVISTTVFCPLSLALTQDGLTLLEIKSSLNGSKNFLSNWQESDESHCTWIGITCHPGEQRVRSINLPYMQLGGIISPSIGRLSRLHRLALHQNDLHGIIPNEISNCTELRALYLRANYFQGGIPSAIGNLSYLQKLDLSSNSLKGAIPSSIGRLTHLQFMNLSTNFFSGEIPDIGVLNTFESNTFIGNLDLCGRQVQKPCRTSLCFPVVLPHSESDEVVGNPTKRSSHYVKRVLIGAISTMGLALVIILSLLWICLLSKKERLATRDTEVKKQVNPESSTKLITFHGDLPYTSSEIIEKLESLDEDDVVGSGGFGTVYRMVMNDCGTFAVKRIDRSREGSDQGFERELEILGSIKHINLVNLRGYCRLPSTKLLIYDYLASGSLDDILHENTEQFLNWSTRLKIAFGAARGLAYLHHDCCPKIVHRDIKSSNILLDENMEPHVSDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYRFGVLLLELVTGKKPTDPSFAKRGLNVVGWMNTFLRENRLEDVVDKRCTDADWGSVEVIIELAASCTDANADDRPSMNQVLQLLEQEVMSPCPSDFYESHSDHC 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3329g00013 601 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
Gabi3329g00013 601 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 187 - -
Gabi3329g00013 601 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Gabi3329g00013 601 Gene3D Transferase(Phosphotransferase) domain 1 389 590 - -
Gabi3329g00013 601 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 389 592 - -
Gabi3329g00013 601 SUPERFAMILY L domain-like 26 209 - -
Gabi3329g00013 601 Pfam Protein kinase domain 316 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3329g00013 601 SUPERFAMILY Protein kinase-like (PK-like) 292 582 IPR011009 -
Gabi3329g00013 601 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 69 582 - -
Gabi3329g00013 601 Pfam Leucine Rich Repeat 143 163 IPR001611 GO:0005515
Gabi3329g00013 601 ProSiteProfiles Protein kinase domain profile. 313 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3329g00013 601 SMART serkin_6 313 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3329g00013 601 Gene3D Phosphorylase Kinase; domain 1 274 388 - -
Gabi3329g00013 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
Gabi3329g00013 601 Gene3D Ribonuclease Inhibitor 26 212 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3329g00013 Gabi-Chr3329 149602 154309 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3329g00013 24 590 Receptor kinase-like Gene Family AT2G35620 49.735 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Gabi3329g00013 Pkinase 4.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3329g00013 - - gmx:100783363 1046.57