Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3329g00009 ATGATAACACCGTCTGATATGGCTGCTGGGAGAGTCTTTTGCTGTGGTCCTGCAAATGCTTCCAATTTCACTACTTTGCTTCCGAATCAAACTGCTCCTTGCACTTCTCAACCTCTTGATTCTCTTTTTCTTTCTACCTCTTCTTCTCCTTTCCTCGGTTCAAGATCTATGATGAGCTTCGAAGATGTTAAAGGAGGGAAGGGGTGTAGTGGCTCGTTCTTCCGCCCTTATGATCCTGATGAAACTGGAGATGAAGACATGGATGACTACTTTCATCAACCTGATCAGAAGAAGCGTCGGCTCTCCGTGGACCAAGTGCATTTTCTCGAGAAAAGCTTTGATCAGGAGAACAAGCTCGAACCCGAAAGAAAAACACGACTAGCCATGGAGCTTGGTTTGCAGCCCCGGCAAGTGGCGATTTGGTTTCAGAACCGCCGAGCACGCTGCAAGACAAAACAGTTGGAGAAGGATTATGATTCCCTTCAAGCTAGCTATAACGATCTTAAGGCCAACTATGATAACCTTCTCAGGGAGAAAGATAAATTGAAAACCGAGGTGGCAAACCTCACCGAGAAGGTGCTTGGAAGAGAGAAAGGAGAGGCAAACGTTGAACAAGCTGAAACAAATGGGTTGGTGGAGCCATTGGAAAAGCCTTTGATTGATTCAGCTTGGGAGGGTGAAGGATCAGAAGAAGTGTCAATTGTGAGTTGTAATCAGGAAGACATAAGTTCAGCCAAGAGTGACATATTTGATTCAGAGATAAGGTTGCTGCAGACCGGTGATTCTTCCTATGTGTTTGAACCTGATCACTCTGATCTGTCTCAGGATGAAGAAGATAACTTGAGCAAGACCCTATTGCCTCTATGCATATTTCCCAAACTTGAAGATGTTGATTACTCCTACCTGCCTCATGGCTCATGTAATTTTGGAATTCCGGAGGAAGATCAAGCCATTTGGTCATGGTGTGATTGA 972 0.4486 MITPSDMAAGRVFCCGPANASNFTTLLPNQTAPCTSQPLDSLFLSTSSSPFLGSRSMMSFEDVKGGKGCSGSFFRPYDPDETGDEDMDDYFHQPDQKKRRLSVDQVHFLEKSFDQENKLEPERKTRLAMELGLQPRQVAIWFQNRRARCKTKQLEKDYDSLQASYNDLKANYDNLLREKDKLKTEVANLTEKVLGREKGEANVEQAETNGLVEPLEKPLIDSAWEGEGSEEVSIVSCNQEDISSAKSDIFDSEIRLLQTGDSSYVFEPDHSDLSQDEEDNLSKTLLPLCIFPKLEDVDYSYLPHGSCNFGIPEEDQAIWSWCD 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3329g00009 323 SMART HOX_1 95 156 IPR001356 GO:0003677
Gabi3329g00009 323 Pfam Homeodomain 97 150 IPR001356 GO:0003677
Gabi3329g00009 323 Gene3D - 100 146 - -
Gabi3329g00009 323 SUPERFAMILY Homeodomain-like 79 154 IPR009057 -
Gabi3329g00009 323 CDD homeodomain 96 153 IPR001356 GO:0003677
Gabi3329g00009 323 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981|GO:0006355
Gabi3329g00009 323 Coils Coil 144 192 - -
Gabi3329g00009 323 Gene3D - 147 194 - -
Gabi3329g00009 323 PRINTS Lambda-repressor HTH signature 123 132 IPR000047 GO:0003677
Gabi3329g00009 323 PRINTS Lambda-repressor HTH signature 132 148 IPR000047 GO:0003677
Gabi3329g00009 323 FunFam homeobox-leucine zipper protein ATHB-6-like 100 146 - -
Gabi3329g00009 323 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677
Gabi3329g00009 323 Pfam Homeobox associated leucine zipper 152 193 IPR003106 GO:0006355|GO:0043565
Gabi3329g00009 323 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 83 258 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3329g00009 Gabi-Chr3329 108128 110193 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3329g00009 40 198 Homeobox Transcription Factor Family AT3G01470 51.235 8.38e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi3329g00009 Homeodomain 5.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3329g00009 - - gmx:732618 457.603