Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3329g00003 ATGGAGTTTGGAGAAGAAAGATCTGGTCATGATGGTGAAGGAGCCAAAGAAGAGAGGAGAAGTGAATCTAGTGTTGGTGATGATGAAGATCGTCGTAAACAAGAGATTATCATCGAGGAGCCACCCAAGACTAATATCGAAAGATCAACGGTGGAGGCTGGGCCAAATGCATCCTCAACCAAAAAGGAAGAGGTTGATGAGCTTGAAAATGCTAAAGCTGAAATGGGTGAAGTGATAGAAGAAAATCAACGATTAAAGATGAGTTTGAACCGAATGCTGAATGATTACCGGACACTGCAAATGCATTTCCACAATGTAGTTCAACAAGAGAACACAAATTCTCCTGATAAAGTAAACAATAACCATCAAGAAATACTAGAGGAGTCAGATCTAGTTTCCCTCAGTCTTGGAAGACTTCCAAGTAATCCAAGAAACAATGAGAAAGCTAAAGTCTCTAAACCATTGAAAGAGGAAGAATATAAAGAAGGTTTAACTCTTGGACTGGACTGCAAATTTGAAACATCAAAATCTGGAAGCACAAATGAACATTTACCAAATCAAAGCCCTGCCAATAGTTCTGAATTACCAAAGGAAGAAGCTGGGGAGACTTGGCCACCCAATAAGGTACAAAAGACAATTAGAGATGCAGGAGAGGATGAAGTTTCCCAACAAAATTCTGCAAAGAAAGCTAGAGTTTGTGTGAGAGCAAGATGTGACACCCCAACTTTGAATGATGGATGTCAATGGAGGAAATATGGACAGAAGATTTCAAAGGGAAATCCTTGCCCTCGAGCTTACTATCGTTGCACAGTTGCACCATCATGCCCCGTAAGAAAACAGGTGCAAAGATGTTCTCAGGACATGTCAATTTTAATCACCACCTACGAAGGGAACCACAACCACCCTCTTTCTCTTTCAGCTACTGCCATGGCTTCAACAACTTCTGCAGCTGCTTCAATGCTATTGTCTGGCTCATCAAGCTCTCGCTCTGGCTCAATGCCTTCAACAGCCATGGCCACCACTACTCCTGCAGATCTTCATGGAATGAACTTTTATCTATCAGATGGTTCCAAATCAAAGCAATTATACTTGTCCCATCCTGCACTATCATCTTCAGCTTCACACCCAACCATTACTCTTGACCTCACTTCAAATCCAGCCAATTCATCAGCTCCTTTTGGTAGATTTACATCAAACTACAACCCCACAACATATCCTTCTTCCACAAGTCTGAACTTCAGTTCCTCCGAATCAAATGCAAATTCTTGGAGCAATGGCTTCCTCAGCTATGGTGCTCAACCATATGATAACAGGAACGTCCTTAACAGCATAAACCTTGGAAGACAACCAATGGAAAATATCTACCATTCCTACATGCAAAGGAATAACAATCCAATCCCTCCTCAACATTCCCTTCCAGACACCATAGCTGCAGCAACAAAAGTAATCACAGCAGACCCAACTTTTCAATCAGCTTTGGCAGCAGCACTTACTTCAATTATTGGCACAGGAAGTGGCACTCAAGGAAACCAAGGTGTTGGAGAAAATTTGAGTCAGAAAATGAAATGGAGTGAACTGTTTCAATCATCTTCTACTTTGCCTTCAACTTCTAAAGTCAATGGCTGTGCATCAAGCTTCATGAACAAAGCACCCGATAATAGTCAAAGTGGAAGTTTGATGTTTATTCAGCCATCTTTGCCATTTTCTGGCCCCAAAAGCGCATCTGCGTCTCCTGGTGATAATAGAGACAACACCAATTAA 1761 0.4162 MEFGEERSGHDGEGAKEERRSESSVGDDEDRRKQEIIIEEPPKTNIERSTVEAGPNASSTKKEEVDELENAKAEMGEVIEENQRLKMSLNRMLNDYRTLQMHFHNVVQQENTNSPDKVNNNHQEILEESDLVSLSLGRLPSNPRNNEKAKVSKPLKEEEYKEGLTLGLDCKFETSKSGSTNEHLPNQSPANSSELPKEEAGETWPPNKVQKTIRDAGEDEVSQQNSAKKARVCVRARCDTPTLNDGCQWRKYGQKISKGNPCPRAYYRCTVAPSCPVRKQVQRCSQDMSILITTYEGNHNHPLSLSATAMASTTSAAASMLLSGSSSSRSGSMPSTAMATTTPADLHGMNFYLSDGSKSKQLYLSHPALSSSASHPTITLDLTSNPANSSAPFGRFTSNYNPTTYPSSTSLNFSSSESNANSWSNGFLSYGAQPYDNRNVLNSINLGRQPMENIYHSYMQRNNNPIPPQHSLPDTIAAATKVITADPTFQSALAAALTSIIGTGSGTQGNQGVGENLSQKMKWSELFQSSSTLPSTSKVNGCASSFMNKAPDNSQSGSLMFIQPSLPFSGPKSASASPGDNRDNTN 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3329g00003 586 MobiDBLite consensus disorder prediction 1 69 - -
Gabi3329g00003 586 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 51 510 IPR044810 GO:0003700
Gabi3329g00003 586 MobiDBLite consensus disorder prediction 136 156 - -
Gabi3329g00003 586 FunFam probable WRKY transcription factor 31 228 305 - -
Gabi3329g00003 586 Pfam WRKY DNA -binding domain 244 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3329g00003 586 Gene3D WRKY domain 227 304 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3329g00003 586 MobiDBLite consensus disorder prediction 549 586 - -
Gabi3329g00003 586 MobiDBLite consensus disorder prediction 1 46 - -
Gabi3329g00003 586 MobiDBLite consensus disorder prediction 174 208 - -
Gabi3329g00003 586 MobiDBLite consensus disorder prediction 174 194 - -
Gabi3329g00003 586 ProSiteProfiles WRKY domain profile. 238 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3329g00003 586 SUPERFAMILY WRKY DNA-binding domain 236 303 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3329g00003 586 Coils Coil 61 88 - -
Gabi3329g00003 586 SMART WRKY_cls 243 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3329g00003 Gabi-Chr3329 47123 51204 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3329g00003 75 503 WRKY Transcription Factor Family AT5G15130 42.644 1.66e-80 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi3329g00003 WRKY 7.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3329g00003 - - gmx:100804403 714.146