Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3325g00047 ATGTTTCACTCCTTTTATGGCAAGAATTCTTCATCTGGATCTGATATTTCGAGGTTGTTCAACTTCAATCCCACTTTGTATAACCTTGGAGCTTCCAATGATGTTTTGGGAGATGGGTTAACATCATCGCATTCATTGGTTTTTGAGAGTGAGAAGAGAGAGCAGGTGAAGTATAGTGCAACTGCAGGGGTAGGAAATAATGAGATTTCTGAGGACAAAGCTTTAGCTGCTTTGAAGAACCATAGAGAAGCAGAGAGGAGGAGGAGGGACAGAATAAACGATCATTTTGCAACACTACGTGGTCTTGTCCCCTCTTCTGAGAAGATGGACAAGGCCACATTACTGACTAAAGTGGTTAACCAAGTAAAAGAATTGAGAAAGGAAGCAGTGGAAGCAAGCAAAGGTATTCTAATACCAATGGATGCTGATGAAGTGAAAGTTGCACCATATGATGATGATGTAGGAGATGGATCCATTTCTTACAGAGCAACTATCTGTTGTGATTACAGAGCTGAGATGTTGTCTGACATAAGACAGACACTTAATGCCCTTAAACTACAACTAGTAAGAGCAGAAATATCAACTTTAGGAGACAGGATGAAGAATGTGTTTGTCTTTACATGTTGCAAAGGGAACAATATTGACACTGAGGCATGCCAAGCTATTGCAAGTACTGTTCATGAGGCACTAAGTTCTGTACTGGATAAGGCTTCTAGCTCACTTGAGTATACAATGAGAATGTCACATCCAAGCAAGCGGAGAAGACTATGCTTTATTGAAACATCTTCTTCCTCATGCAACCATGGATCCTGTTCTTGTTGA 822 0.4051 MFHSFYGKNSSSGSDISRLFNFNPTLYNLGASNDVLGDGLTSSHSLVFESEKREQVKYSATAGVGNNEISEDKALAALKNHREAERRRRDRINDHFATLRGLVPSSEKMDKATLLTKVVNQVKELRKEAVEASKGILIPMDADEVKVAPYDDDVGDGSISYRATICCDYRAEMLSDIRQTLNALKLQLVRAEISTLGDRMKNVFVFTCCKGNNIDTEACQAIASTVHEALSSVLDKASSSLEYTMRMSHPSKRRRLCFIETSSSSCNHGSCSC 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3325g00047 273 Gene3D - 71 134 IPR036638 GO:0046983
Gabi3325g00047 273 Pfam Helix-loop-helix DNA-binding domain 80 125 IPR011598 GO:0046983
Gabi3325g00047 273 Coils Coil 174 194 - -
Gabi3325g00047 273 SMART finulus 82 131 IPR011598 GO:0046983
Gabi3325g00047 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 129 IPR036638 GO:0046983
Gabi3325g00047 273 PANTHER TRANSCRIPTION FACTOR BHLH30 40 261 IPR045847 GO:0003700|GO:0006355
Gabi3325g00047 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 125 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3325g00047 Gabi-Chr3325 479819 482271 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3325g00047 67 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 43.023 2.47e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3325g00047 HLH 3.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3325g00047 - - gmx:100804756 360.918