Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3325g00046 ATGTTTTACTCCTTTTATGACAAAAAATCTTCATCTGGCTCTGATATTTCGAGGTTGTTCAATCCCACTTTGCATAACCTTGGAGCTTCCAATGATGTTTCGCGAGTTGGGTTGTCATCATCGCAATATTCATTGGTTTTTGAGAGAGAGAAGGGAGAGCTGGTGAAGTGCAGTGCAACTGAAAGGGCAGAAAAAAATGAGATTTCTGATGCCAAAGCTTTAGCTGCTATGAAGAGCCATTGCGAAGCAGAGAGGAGGAGAAGGGACAAAATAAACGCTCATTTTGCAACACTACGTGGTCTTGTTCCCTCCTCTGAAAAGATGGATAAAGCCACATTACTGGCTGAAGTGATTAGCCAAGTAAAGGAATTGAAAACGAAAGCAGTGGAAGCAAGCAAAGGTATTCTAATCCCAATGGATGCTGATGAAGTGAATGTTGTACCAAATGATGATGATGTAGAAGATGGATCCATGTCTTACAGCGCAACTATCTGCTGTGATTACCAACCTGAACTGCTGTCTGATCTAGGAAAGACATTTGATACCCTTCAATTACCAGTGAAGGCAAAAATATCAACTTTAGGAGGCAGGATGAAGAATGTGTTTATCTATACATGTTGCGAAGGGGACAATATTAATATGGAGGCATGCCAAGCTATTGCAAGTACTGTTCATGAGGCACTAAGTTCTGTATTGGTTAAGGCTTCTAAGTCACTGGAGTACTCACTGAGAAGGTCACGCCCAAGCAAGCGGAGAAGACTTTGCTTTATTAATGAAACATCTACTTCCCCTTGCAACAATGGATCCTGTTCTTGCTGA 819 0.4151 MFYSFYDKKSSSGSDISRLFNPTLHNLGASNDVSRVGLSSSQYSLVFEREKGELVKCSATERAEKNEISDAKALAAMKSHCEAERRRRDKINAHFATLRGLVPSSEKMDKATLLAEVISQVKELKTKAVEASKGILIPMDADEVNVVPNDDDVEDGSMSYSATICCDYQPELLSDLGKTFDTLQLPVKAKISTLGGRMKNVFIYTCCEGDNINMEACQAIASTVHEALSSVLVKASKSLEYSLRRSRPSKRRRLCFINETSTSPCNNGSCSC 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3325g00046 272 Pfam Helix-loop-helix DNA-binding domain 79 124 IPR011598 GO:0046983
Gabi3325g00046 272 CDD bHLH_AtAIG1_like 70 149 - -
Gabi3325g00046 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 124 IPR011598 GO:0046983
Gabi3325g00046 272 PANTHER TRANSCRIPTION FACTOR BHLH30 39 258 IPR045847 GO:0003700|GO:0006355
Gabi3325g00046 272 SMART finulus 81 130 IPR011598 GO:0046983
Gabi3325g00046 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 128 IPR036638 GO:0046983
Gabi3325g00046 272 Gene3D - 70 133 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3325g00046 Gabi-Chr3325 468089 472804 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3325g00046 72 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 42.515 3.40e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3325g00046 HLH 7.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3325g00046 - - gmx:100804756 355.525