Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3325g00045 ATGTTTTACTCAGACAAAAAATCTTCATCTGACTCTGATATTTCGATGTTGTTCAATCCCACTTTGCATAACCTTGGAGCTTCCAATGATGTTTCGCGAGGTGGGTTGTCATCATCCCAATATTCATTGGTTTTTGAGAGTGAGAAGGGAGAGCTGGTGGAGTGCAGTGCAACTGAAAGGGTAGGAAAAAATGAGATTTCTGAGGCCAAAGCTTTAGCTGCTATGAAGAGGCATAGAGAAGCAGAGAGGAGGAGGAGGGACAAAATAAACGCTCAATTTGCAACACTACGTGGTCTTGTCCCCTCCGCCAAAAAGATGGACAAAGCCACATTACTGACTGAAGTGGTTATCCAAGTAAAGGAATTGAGAAAGAAAGCAGTGGAAGCAGTGGAAGCAAGCAAAGGTTTTCTAATCCCGATGGATGCTGATGAAGTGAAAGTTGTACCATATGATGATGATGGAGCAAAAGGATCCATGTCTTACACTGCAACTATATGCTGTGATTACCAACCTGAGACGCTGTCTGACCTAAGACATACATTTGAAACCCTTCAATTAATAGTGAGGGCAGAAATATCAACTTTAGGAGGCAGGATGAAGAATGTGTTTGTCTTTACATGTTGCAAAGGGGACAATATTAATATGGAGGAATGCCAAGCCATTGCAAATACTGTTCACCAGGCACTAAGTTCTGTATTGGTTAAGGCTTCTAGCTCACTGGAGTACTCACTGAGAATGTCACGCCCATGCAAGCAGAGAAGACTATGCTGTATTAATGAAACATCTACTTCCTCAAAATAG 801 0.4195 MFYSDKKSSSDSDISMLFNPTLHNLGASNDVSRGGLSSSQYSLVFESEKGELVECSATERVGKNEISEAKALAAMKRHREAERRRRDKINAQFATLRGLVPSAKKMDKATLLTEVVIQVKELRKKAVEAVEASKGFLIPMDADEVKVVPYDDDGAKGSMSYTATICCDYQPETLSDLRHTFETLQLIVRAEISTLGGRMKNVFVFTCCKGDNINMEECQAIANTVHQALSSVLVKASSSLEYSLRMSRPCKQRRLCCINETSTSSK 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3325g00045 266 SMART finulus 79 128 IPR011598 GO:0046983
Gabi3325g00045 266 Coils Coil 72 92 - -
Gabi3325g00045 266 Pfam Helix-loop-helix DNA-binding domain 77 121 IPR011598 GO:0046983
Gabi3325g00045 266 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 126 IPR036638 GO:0046983
Gabi3325g00045 266 Gene3D - 68 131 IPR036638 GO:0046983
Gabi3325g00045 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 122 IPR011598 GO:0046983
Gabi3325g00045 266 PANTHER TRANSCRIPTION FACTOR BHLH30 35 257 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3325g00045 Gabi-Chr3325 438180 447487 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3325g00045 5 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 34.874 5.69e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3325g00045 HLH 1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3325g00045 - - gmx:100804756 331.257