Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3325g00044 ATGGTTATCCCAATTTATAGCTTGCTCTCATGGTTTGCATTAAAACTTGCACTTGGTCCCCCATTTGTGGTTGCATTCTTGATTTATAAATGGAGGAGGAGGGATCAATCTGGGTGTGAAGAGGTCGAGGATTTTCTCCAAAATCACAGTAATCTAACACCCATCAAGTACTCTTACTCTGATATAAAGAAAATGACCAAAGGTTTCAAGCACAAGTTAGGTGAAGGAGGCTATGGCTATGTCTATAAAGGAAAGCTCCAAAGTAAACGTGATGTTGCTGTGAAAATATTAGGCAAGTCCAAAAAACCAAATGAGCAACAGTTCATAAATGAAGTTGTCACTATTGGAAAGATTCGTCACATCAATGTAGTGCAATTGATTGGATTTTGTGCAGAAAGAACTAAGCGAGCTCTTGTTTATGAGTACATGCCTAATGGTTCTCTAGACAAGCACATATTTTCACAAGAACAAGGGAATATATCAATAAGCTATGAGAAAATCTATAATATTTCTCTTGGGGTGGCTCGTGGAATTGAATACTTACATGAAGGTTGTGATATGCATATTCTACACTTTGATATCAAACCTCATAACATTCTTCTTGATGATGATTTTAATCCAAAGATCTCGGACTTTGGACTTGCAAAGTCATATCCAATAGATGATAGCATTGTGTCTTTAACAGTGGCAAGAGGAACAATGGGTTACATGGCACCTGAATTGCTCTACAAAAACATTGGAGGCATCTCATACAAAGCTGATGTTTATAGCTTTGGGATGCTATTGATGGAGATGGCAGGTAGAAGAAAGAACTTGAATGCTATGGAGTACTCTTGGCAGACCTACTTTGCTAAATGGGTTTATGACCAATTTGAGGAAATGATAGATTTGAGTAATGTCACAGAAGAGGAAAAGGTGATAGCAAATAAGATGATAGTAATAGCTTTACATTGCATACAGATGAAGCCAAATGATCGTCCTTCAATGAATGAAGTAATAAAGATGCTTGAAGGAGAATCTGAGTTCCAAGATGCTCTTCCTTCTCAGCCTCTGTTTACTTTGCAGGGGATGCCAACAGATCATGTTCATGCTGGTGAAAGTTCGAATTTGGCATGTTGTCAATCAGAGTAA 1131 0.3775 MVIPIYSLLSWFALKLALGPPFVVAFLIYKWRRRDQSGCEEVEDFLQNHSNLTPIKYSYSDIKKMTKGFKHKLGEGGYGYVYKGKLQSKRDVAVKILGKSKKPNEQQFINEVVTIGKIRHINVVQLIGFCAERTKRALVYEYMPNGSLDKHIFSQEQGNISISYEKIYNISLGVARGIEYLHEGCDMHILHFDIKPHNILLDDDFNPKISDFGLAKSYPIDDSIVSLTVARGTMGYMAPELLYKNIGGISYKADVYSFGMLLMEMAGRRKNLNAMEYSWQTYFAKWVYDQFEEMIDLSNVTEEEKVIANKMIVIALHCIQMKPNDRPSMNEVIKMLEGESEFQDALPSQPLFTLQGMPTDHVHAGESSNLACCQSE 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3325g00044 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Gabi3325g00044 376 SMART serkin_6 67 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3325g00044 376 Gene3D Transferase(Phosphotransferase) domain 1 143 347 - -
Gabi3325g00044 376 PANTHER RUST RESISTANCE KINASE LR10-RELATED 40 350 IPR045874 GO:0004672
Gabi3325g00044 376 Pfam Protein kinase domain 70 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3325g00044 376 SUPERFAMILY Protein kinase-like (PK-like) 49 337 IPR011009 -
Gabi3325g00044 376 FunFam PR5-like receptor kinase 143 346 - -
Gabi3325g00044 376 ProSitePatterns Protein kinases ATP-binding region signature. 73 95 IPR017441 GO:0005524
Gabi3325g00044 376 Gene3D Phosphorylase Kinase; domain 1 41 142 - -
Gabi3325g00044 376 ProSiteProfiles Protein kinase domain profile. 67 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3325g00044 376 FunFam serine/threonine-protein kinase PBS1-like 35 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3325g00044 Gabi-Chr3325 433391 435452 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3325g00044 56 353 Receptor kinase-like Gene Family AT5G38280 50.485 1.25e-99 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi3325g00044 Pkinase 2.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3325g00044 - - tpra:123914142 491.115