LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3325g00041	ATGTTCTCAATCAGGGTCTTTCTTCTCTTGTTATCACTTGTGTTCTCTTTCTTTTGTTGTTCTTTTTCCACTGTTCAACACAAGCACCACCGTCGTGTCCTCCACCAACCATTCTTTCCAAGAATATCTAATCCTCCAACACAAGCACCAACTTCTTCATCTCCTCAACCTCAACCTCAACCAAAACAACAACAACAACCCAAGCTTCCATTTTCTTCGTCTTCTTCTTCTTCATCTTCTTCTTCTTCATCACAGAAGCCTTTCTTCCCTTCCTACCATACCCCACCATTCCCTCCTTCACCAACCGTCGTTGCCACATTCCCTGCAAACATTTCCTCCCTCCTCCTTCCCCGACAATACTCCCATCACCACAACCCTGTCATCGCCGTCGTCGTCTCCCTCTCTCTCCTCTCCTTGGCTCTCCTCGCCGCCGCCACAGCCTTTGCCAACCACCGCCTCCGAAACAAACACGCCGCCTCCGCAGCCTCCCCCGATGACGACGACAAGGCTTCGAGATCGGATAATCTCCGGTTATTCCCGGCGAACACCGCAGCTTCCGACGGCGGCGATCGTGGCAAGTTTCTTTACCTCGGTACGGTGGCGAGTTCAGAGGAAGCAAGAGGAGCCGGAGATTCAAGTTGCAGCAGCAACGGCGGTTTCTTGCCGCCGTACCGGAAACTGGGAGACTCGCCGGAACTGAATCCGCTTCCTCCTCTGCCACGCTACAATTTCAGAGCGTGGGCGAGTGAAGGGGATGATGTTGAAGAGAAAAAGGAAGAGGAAGAGGAAGAGGAACAGTTCTTTTCTCCAAGAGGGTCTTCTGGGAACAAACTACAGAGTCCTCCTTCACCTTCTGGTGTTGTTGTTGCTGCATCAAGCTCTCGCTCGCTAAAGGTGTTTCATTTGGAGAAATTTGGGAGCAGAAGCTTCACTTCAAGAACCCCATCTTACCCTCGTTCAAACTCTCTTTCTAATTCCATGTCTCGTTCCCCTTCTTTGAATTTGAGCCCCAGAAGCATCAAATCATTGCCTCCTCAAAATCCTCGTTCCCCATCTTTATCTTCATCCTCTTCTTCTCCGAAGCCAAGGGAGGATTTGAGTTCAACTTGGGATGTTTCAGGTCAGGGAAAGGATTCTCAGACAACTAAACTGCCTCCTCCTCCGCCGCCACCACCACCACCTCCGCCGCCACGGTTTTGGGAGACTCCGGTTGTAACTAGATTGGGTGAAGATGTTGGTGTTAAGAATGAGAATGAGGAGACTCCAAAGCCAAAGTTGAAAGCTTTACATTGGGATAAAGTTAAAGCCAGCTCGGACAGGGTCATGGTTTGGGATCGGTTGAGACCAAGTTCTTTCCAATTGAACGAGGACATGATTGAGACACTCTTTATGGTAAATAATTTCAAGGAAAATTCTGGTCTTGCTCTTAGAGATAATGCTCGGCGTCAAATAATTCATTCTTCACCAATGCAACCGGAAAATAGGGTGCTTGACCCTAAGAAGTCTCAGAACATTGCCATTTTGCTTAGGGCTCTAAATGTAACTATTGATGAAGTTTGTGAAGCCCTCAGAGAAGGCAATTGTGATACATTGGGAACAGAACTTTTGGAAAGTTTATTAAAGATGGCTCCAACCAAAGATGAAGAATCTAAGCTGAAAGAGTTTCAAGAAGAATCGCCCATCAAGCTTGGTCCAGCTGAGAAATTTCTTAAAGTCGTGCTTGATATACCTTTTGCATTTAAGAGAGTGGATGCCATGCTCTACATTGCTAATTTTGATTCAGAATTAGAATATCTTAGGAAGTCCTTTGAAACTCTGGAGGTGGCTTGTGAGGAATTAAGGAATAGCAGAATGTTTTTGAAGATACTTGAAGCAGTGCTCAGAACGGGAAACCGAATGAATGTTGGCACCAATCGTGGTGATGCACATGCATTCAAACTGGATACGCTTTTGAAGTTAGTTGATATCAAAGGAACCGATGGAAAGACTACTCTCTTGCATTTTGTTGTACAGGAAATTGTGAGAACCGAGGGTTCTCATATTTTGGGTTCTGACAAAATCCAGCAATATACTATTCAAGATGAAGTTGACTTTAGGAAACTTGGACTTCAAGTTGTTTCAGGTTTGAGTGGGGAACTCACCAGTGTTAAAAAAGCAGCTGCTATGGATTCAGAAATGCTCAGTGGTGATGTTGCTAAACTTGCCAGAGGGATTGAAAAAGTTGTGCAAGTTGTAAAATTGAATGAAGAGTCACCTTTGAGAGAAACTAACCAAAAATTTTCTGAGGCAATGAAAGGCTTCTTGGAGAGGGGAGAGGAAGAGATTTTAAGAATCCAGGAACAAGAGAAAAATGCTGTGTCTTCAGTAAAGGAGGTAACTGAGTATTTCCACGGAAATTCAGCAAAGGAAGAAGCTCGTCCGTTTAGAATTTTTATGGTTGTGAGGGATTTCCTTTCAATACTAGATGGTGTTTGCAAGGAAGTTGGGAAAGTAAACGAGAGGACTTTAGTTGGTTCACGTCAATATGTAATGCCTTCAAACCCTATACTGCCAGCAATTTTTCCTGAGTTTATTGGTAAGCAGCATTCTGATTCCTCAGAATCTGATTAA	2610	0.4483	MFSIRVFLLLLSLVFSFFCCSFSTVQHKHHRRVLHQPFFPRISNPPTQAPTSSSPQPQPQPKQQQQPKLPFSSSSSSSSSSSSSQKPFFPSYHTPPFPPSPTVVATFPANISSLLLPRQYSHHHNPVIAVVVSLSLLSLALLAAATAFANHRLRNKHAASAASPDDDDKASRSDNLRLFPANTAASDGGDRGKFLYLGTVASSEEARGAGDSSCSSNGGFLPPYRKLGDSPELNPLPPLPRYNFRAWASEGDDVEEKKEEEEEEEQFFSPRGSSGNKLQSPPSPSGVVVAASSSRSLKVFHLEKFGSRSFTSRTPSYPRSNSLSNSMSRSPSLNLSPRSIKSLPPQNPRSPSLSSSSSSPKPREDLSSTWDVSGQGKDSQTTKLPPPPPPPPPPPPPRFWETPVVTRLGEDVGVKNENEETPKPKLKALHWDKVKASSDRVMVWDRLRPSSFQLNEDMIETLFMVNNFKENSGLALRDNARRQIIHSSPMQPENRVLDPKKSQNIAILLRALNVTIDEVCEALREGNCDTLGTELLESLLKMAPTKDEESKLKEFQEESPIKLGPAEKFLKVVLDIPFAFKRVDAMLYIANFDSELEYLRKSFETLEVACEELRNSRMFLKILEAVLRTGNRMNVGTNRGDAHAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIVRTEGSHILGSDKIQQYTIQDEVDFRKLGLQVVSGLSGELTSVKKAAAMDSEMLSGDVAKLARGIEKVVQVVKLNEESPLRETNQKFSEAMKGFLERGEEEILRIQEQEKNAVSSVKEVTEYFHGNSAKEEARPFRIFMVVRDFLSILDGVCKEVGKVNERTLVGSRQYVMPSNPILPAIFPEFIGKQHSDSSESD	869

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3325g00041	869	SMART	it6_source	416	836	IPR015425	-
	Gabi3325g00041	869	MobiDBLite	consensus disorder prediction	269	292	-	-
	Gabi3325g00041	869	MobiDBLite	consensus disorder prediction	158	174	-	-
	Gabi3325g00041	869	MobiDBLite	consensus disorder prediction	39	91	-	-
	Gabi3325g00041	869	MobiDBLite	consensus disorder prediction	250	402	-	-
	Gabi3325g00041	869	MobiDBLite	consensus disorder prediction	155	175	-	-
	Gabi3325g00041	869	PANTHER	FORMIN-RELATED	14	857	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Gabi3325g00041	869	MobiDBLite	consensus disorder prediction	50	64	-	-
	Gabi3325g00041	869	Pfam	Formin Homology 2 Domain	418	821	IPR015425	-
	Gabi3325g00041	869	Gene3D	Formin, FH2 domain	412	832	IPR042201	-
	Gabi3325g00041	869	MobiDBLite	consensus disorder prediction	307	381	-	-
	Gabi3325g00041	869	Coils	Coil	244	264	-	-
	Gabi3325g00041	869	MobiDBLite	consensus disorder prediction	65	90	-	-
	Gabi3325g00041	869	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	387	834	-	-
	Gabi3325g00041	869	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	416	847	IPR015425	-
	Gabi3325g00041	869	MobiDBLite	consensus disorder prediction	382	401	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3325g00041	Gabi-Chr3325	418229	422945	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3325g00041	330	862	FH2 protein (formin) Gene Family	AT3G25500	60.223	0.0	607

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3325g00041	-		-	aprc:113857957	1002.28