Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3325g00017 ATGATGGGACATAAAAGGAGCCCATGCTCTGTTGATCAAAGCAATTATACTTCTATTGCATCTAAAAGGCAAAAGGCTGATTTATCCATCACTACTAAGGAGAGAAAGGAAAAGCTTGGCGAACGAATTGTTGCGCTTCAGCAGCTTGTTTCACCATATGGGAAGACAGATACATCTTCTGTTCTAAAGGAGGCAATGGAATACATAGGGTTCCTTCATAAACAAGTTAAGCTGCTTAGTGCTCCTTACCTCGAAACTTCACCAACGAACAAGATGCAGGGTACAGAGCCATGCAGCCTGAGGAGTAGAGGGTTATGTCTTGTTCCTGTCTCATTTACTATTGGAGTTGCTGAGAGCAATGGTGCAGATATCTGGGCTCCCATCAAGACTACTTCACCTAAACTTGAGAATGATGTGTCGCAATTTCATTGA 432 0.4259 MMGHKRSPCSVDQSNYTSIASKRQKADLSITTKERKEKLGERIVALQQLVSPYGKTDTSSVLKEAMEYIGFLHKQVKLLSAPYLETSPTNKMQGTEPCSLRSRGLCLVPVSFTIGVAESNGADIWAPIKTTSPKLENDVSQFH 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3325g00017 143 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 19 113 - -
Gabi3325g00017 143 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 27 88 IPR036638 GO:0046983
Gabi3325g00017 143 Gene3D - 20 92 IPR036638 GO:0046983
Gabi3325g00017 143 FunFam Transcription factor bHLH113 family 22 97 - -
Gabi3325g00017 143 CDD bHLH_AtbHLH_like 29 80 IPR045239 -
Gabi3325g00017 143 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 23 72 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3325g00017 Gabi-Chr3325 189192 194733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3325g00017 1 130 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 53.947 3.83e-50 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3325g00017 - - gmx:100809747 259.225