Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3325g00016 ATGATAGCCAGCTCCTTCTGCAATGCTGATTCTATGTTTTCAAGAGAAGAGGGGATAGATGTTAGAAAGATGATGGGACATAAAAGGAGCCCATGCTCTGTTGATCAAAGCAATTATACTTCTATTGCATCTAAAAGGCAAAAGGCTGATTTATCCATCACTACTAAGGAGAGAAAGGAAAAGCTTGGCGAACGAATTGTTGCGCTTCAGCAGCTTGTTTCACCATATGGGAAGACAGATACATCTTCTGTTCTAAAGGAGGCAATGGAATACATAGGGTTCCTTCATAAACAACTGCTTAGTGCTCCTTACCTCGAAACTTCACCAACGAACAAGATGCAGGGTACAGAGCCATGCAGCCTGAGGAGTAGAGGGTTATGTCTTGTTCCTGTCTCATTTACTATTGGAGTTGCTGAGAGCAATGGTGCAGATATCTGGGCTCCCATCAAGACTACTTCACCTAAACTTGAGAATGATGTGTCGCAATTTCATTGA 495 0.4242 MIASSFCNADSMFSREEGIDVRKMMGHKRSPCSVDQSNYTSIASKRQKADLSITTKERKEKLGERIVALQQLVSPYGKTDTSSVLKEAMEYIGFLHKQLLSAPYLETSPTNKMQGTEPCSLRSRGLCLVPVSFTIGVAESNGADIWAPIKTTSPKLENDVSQFH 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3325g00016 164 Gene3D - 43 109 IPR036638 GO:0046983
Gabi3325g00016 164 FunFam Transcription factor bHLH113 family 45 118 - -
Gabi3325g00016 164 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 100 IPR036638 GO:0046983
Gabi3325g00016 164 CDD bHLH_AtbHLH_like 52 99 IPR045239 -
Gabi3325g00016 164 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Gabi3325g00016 164 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 39 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3325g00016 Gabi-Chr3325 189191 194733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3325g00016 24 151 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 52.632 4.87e-48 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3325g00016 - - gmx:100809747 295.434