Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3325g00013 ATGATGGACGAGTTCATTGTATGCATTGATCGGATTATAGCCTCCACGGCTTGTTTTGGTGAAGCAGTAAATGGAAGAGAATGTGATGTTGACTCAATACCTGTTTCTGAGAATGGTGGACAAGGAGAAGGGTGCTCCTCATCTTCTTCTTCTTCTTCAAACAGGGATGATGATGATGTTGTTGTTGTTGTTGTGGAGTGCAGAATATGCCAGGAAGAAGATCTACTCCAAGCCATGGAGGCTCCTTGTTCCTGTAAAGGCACTCTCAAGTTCGCTCATAGGAAGTGTATCCAGCGATGGTGCAATAAGAAAGGAAATACAATATGTGAAATCTGTAATCAGGCATTTTCACCAAATTATTCTCTTCCACCAGTCAGAAGCAATGACATTATGGCAATTGATATAAGGCAAGAATGGGGGCATAATACTGATCTCCGTGTGGCTCTGGCTTCAGCAGAGCACCAGTTGCTGCAAACTGAGTATGAAGATTATGCTATTACACAAACCAGTAGCGTTGCTTGCCTTCGCTCTATCACTCTCATTTTGGTTATAATTTTGCTTGTACGCCAAGCTTTAATGGTCATGAAGAACTCTACAACTGGGCAAGATTCATCCATACTCTTTAATTTTCAGATGTCATTCCTTCAATTTGCTGGTGTTCTTTTGCCATGCTGTGCAATGGCACGTTCCTGGTACGTCATACAGAACCGAAGGAGAAGACAGGGTTAA 729 0.4239 MMDEFIVCIDRIIASTACFGEAVNGRECDVDSIPVSENGGQGEGCSSSSSSSSNRDDDDVVVVVVECRICQEEDLLQAMEAPCSCKGTLKFAHRKCIQRWCNKKGNTICEICNQAFSPNYSLPPVRSNDIMAIDIRQEWGHNTDLRVALASAEHQLLQTEYEDYAITQTSSVACLRSITLILVIILLVRQALMVMKNSTTGQDSSILFNFQMSFLQFAGVLLPCCAMARSWYVIQNRRRRQG 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3325g00013 242 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 241 IPR033275 -
Gabi3325g00013 242 MobiDBLite consensus disorder prediction 34 57 - -
Gabi3325g00013 242 SMART ringv_2 66 113 IPR011016 GO:0008270
Gabi3325g00013 242 ProSiteProfiles Zinc finger RING-CH-type profile. 59 119 IPR011016 GO:0008270
Gabi3325g00013 242 MobiDBLite consensus disorder prediction 39 57 - -
Gabi3325g00013 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 123 IPR013083 -
Gabi3325g00013 242 SUPERFAMILY RING/U-box 65 116 - -
Gabi3325g00013 242 CDD RING_CH-C4HC3_MARCH 67 113 - -
Gabi3325g00013 242 Pfam RING-variant domain 67 112 IPR011016 GO:0008270
Gabi3325g00013 242 Pfam Protein of unknown function (DUF3675) 118 231 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3325g00013 Gabi-Chr3325 167746 173402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3325g00013 56 112 C3H Transcription Factor Family AT2G37950 43.333 3.19e-08 50.8