Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3321g00036 ATGGCAACAAACAGGTTTATATGTGAAGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACTTGCCTTGGAAGTTAAAGCAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCCGAACCCACATGCGTCCACCATGACCCTTCAAGGGCTCTTGGTGACCTCACTGGTATTAAGAAACACTACTCTCGCAAACATGGTGAGAAAAAATGGAAGTGTGACAAATGCTCCAAAAAATATGCTGTTCAATCTGATTGGAAAGCACATTCTAAAACTTGTGGCACCAGAGAATATAGATGTGACTGTGGCACTCTCTTCTCCAGAAGAGACAGTTTCATAACTCACAGGGCCTTCTGTGATGCACTGGCTCAAGAAAGTGCAAGACAACCACCGAACCTAAGCAGTGCCATTAGCAGCAACAACAACAACAACATAGCCTTATCTCAAATGGGTTCACAGATCTCCTCCATCCATGACAATAACAACAACAATTCTAGTGACCTATTACGTTTCACTGGTCAATTTGACCACATTCTCCCACCACCACCATCACATATTAGACCTTCACAACAACAACAAACCATTCACAACACAACCACACCTTCATTCTTCATCTCATCAGAATCAAACCAAAACCAAAATAATTACCACACAAACAACAATTCCCCATCTGGACCAAACCTCTTCAACCTTCCCTTTCTTTCAAGTCGCAGCAACAACAACAACAACTATTCTGAAGAACATTTCAACTATGAAGGGTCATCAAATTTCTTCTCTGCAAGTGCACCTTCTCTCTTCAGCACATCTTTCCAAAGCAGCAACACAACCATCCCTCATAACATGTCCGCAACAGCACTGCTTCAAAAAGCTGCTCAAATGGGTGCAACTTCAAGCAACAACAACAATAATAACAACAACAACACTGCATCCTCATTGCTTAGAAGCTTTGGAACATCATCAAACAATAACCAGCATAACAACTTTCAAGGCCTAATGAACTCGTTTGCAGGTAGTGGAAACTCTTCCATCTTCGAAAGCGTGTCTTCTTCTGATGCAGTGCTTGCTGGGTTTGAAGCATTCGATCATGGCATTAACAGAGAGCTTAAACTTCCAACTGTGAGCATTGGAGGCTCTGATAGACTCACCCGAGACTTTCTAGGAGTTGGTCATGTTGTGAGAAACATGAGTGGTGGTGGAGTTTCACAAAGAGAACAACAACAACAACAAAGTGGTTTCAACTTGAGCTCTTTGGAATCAGAGAGAAATAATGCTGCGCCGTCAGGACAAACTTTTCGAGGTGGAAGGAACGACTTTCAGTGA 1353 0.4257 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLSSAISSNNNNNIALSQMGSQISSIHDNNNNNSSDLLRFTGQFDHILPPPPSHIRPSQQQQTIHNTTTPSFFISSESNQNQNNYHTNNNSPSGPNLFNLPFLSSRSNNNNNYSEEHFNYEGSSNFFSASAPSLFSTSFQSSNTTIPHNMSATALLQKAAQMGATSSNNNNNNNNNTASSLLRSFGTSSNNNQHNNFQGLMNSFAGSGNSSIFESVSSSDAVLAGFEAFDHGINRELKLPTVSIGGSDRLTRDFLGVGHVVRNMSGGGVSQREQQQQQSGFNLSSLESERNNAAPSGQTFRGGRNDFQ 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3321g00036 450 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
Gabi3321g00036 450 SMART c2h2final6 6 28 IPR013087 -
Gabi3321g00036 450 SMART c2h2final6 82 102 IPR013087 -
Gabi3321g00036 450 SMART c2h2final6 47 77 IPR013087 -
Gabi3321g00036 450 FunFam Zinc finger protein MAGPIE 2 29 - -
Gabi3321g00036 450 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 415 IPR031140 -
Gabi3321g00036 450 MobiDBLite consensus disorder prediction 407 450 - -
Gabi3321g00036 450 Gene3D Classic Zinc Finger 6 50 - -
Gabi3321g00036 450 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Gabi3321g00036 450 MobiDBLite consensus disorder prediction 409 450 - -
Gabi3321g00036 450 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
Gabi3321g00036 450 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Gabi3321g00036 450 MobiDBLite consensus disorder prediction 213 245 - -
Gabi3321g00036 450 Gene3D Classic Zinc Finger 60 139 - -
Gabi3321g00036 450 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3321g00036 Gabi-Chr3321 470595 480027 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3321g00036 1 406 C2H2 Transcription Factor Family AT2G02080 47.717 1.59e-115 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3321g00036 zf-C2H2_jaz 2.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3321g00036 K25870 - gmx:100786121 479.174