Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3321g00035 ATGGCTGCATCTTTTTCAGCAACATCACTCTTTGGAGTCAGAGAAGAGGATCAGAATCAGATGAAGCAACAGCATTCATCAACACCATCATCATCAACAACTCCAGCTGCACCACCCCAGAAGAAAAGAAGAAACCAACCTGGAACACCAAATCCAGATGCGGAGGTGATAGCACTATCACCGAAGACACTAATGGCAACAAACAGGTTTATATGTGAAGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACTTGCCTTGGAAGTTAAAGCAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCCGAACCCACATGCGTCCACCATGACCCTTCAAGGGCTCTTGGTGACCTCACTGGTATTAAGAAACACTACTCTCGCAAACATGGTGAGAAAAAATGGAAGTGTGACAAATGCTCCAAAAAATATGCTGTTCAATCTGATTGGAAAGCACATTCTAAAACTTGTGGCACCAGAGAATATAGATGTGACTGTGGCACTCTCTTCTCCAGAAGAGACAGTTTCATAACTCACAGGGCCTTCTGTGATGCACTGGCTCAAGAAAGTGCAAGACAACCACCGAACCTAAGCAGTGCCATTAGCAGCAACAACAACAACAACATAGCCTTATCTCAAATGGGTTCACAGATCTCCTCCATCCATGACAATAACAACAACAATTCTAGTGACCTATTACGTTTCACTGGTCAATTTGACCACATTCTCCCACCACCACCATCACATATTAGACCTTCACAACAACAACAAACCATTCACAACACAACCACACCTTCATTCTTCATCTCATCAGAATCAAACCAAAACCAAAATAATTACCACACAAACAACAATTCCCCATCTGGACCAAACCTCTTCAACCTTCCCTTTCTTTCAAGTCGCAGCAACAACAACAACAACTATTCTGAAGAACATTTCAACTATGAAGGGTCATCAAATTTCTTCTCTGCAAGTGCACCTTCTCTCTTCAGCACATCTTTCCAAAGCAGCAACACAACCATCCCTCATAACATGTCCGCAACAGCACTGCTTCAAAAAGCTGCTCAAATGGGTGCAACTTCAAGCAACAACAACAATAATAACAACAACAACACTGCATCCTCATTGCTTAGAAGCTTTGGAACATCATCAAACAATAACCAGCATAACAACTTTCAAGGCCTAATGAACTCGTTTGCAGGTAGTGGAAACTCTTCCATCTTCGAAAGCGTGTCTTCTTCTGATGCAGTGCTTGCTGGGTTTGAAGCATTCGATCATGGCATTAACAGAGAGCTTAAACTTCCAACTGTGAGCATTGGAGGCTCTGATAGACTCACCCGAGACTTTCTAGGAGTTGGTCATGTTGTGAGAAACATGAGTGGTGGTGGAGTTTCACAAAGAGAACAACAACAACAACAAAGTGGTTTCAACTTGAGCTCTTTGGAATCAGAGAGAAATAATGCTGCGCCGTCAGGACAAACTTTTCGAGGTGGAAGGAACGACTTTCAGTGA 1545 0.4291 MAASFSATSLFGVREEDQNQMKQQHSSTPSSSTTPAAPPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLSSAISSNNNNNIALSQMGSQISSIHDNNNNNSSDLLRFTGQFDHILPPPPSHIRPSQQQQTIHNTTTPSFFISSESNQNQNNYHTNNNSPSGPNLFNLPFLSSRSNNNNNYSEEHFNYEGSSNFFSASAPSLFSTSFQSSNTTIPHNMSATALLQKAAQMGATSSNNNNNNNNNTASSLLRSFGTSSNNNQHNNFQGLMNSFAGSGNSSIFESVSSSDAVLAGFEAFDHGINRELKLPTVSIGGSDRLTRDFLGVGHVVRNMSGGGVSQREQQQQQSGFNLSSLESERNNAAPSGQTFRGGRNDFQ 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3321g00035 514 Gene3D Classic Zinc Finger 49 118 - -
Gabi3321g00035 514 MobiDBLite consensus disorder prediction 1 47 - -
Gabi3321g00035 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Gabi3321g00035 514 FunFam protein indeterminate-domain 12-like 49 117 - -
Gabi3321g00035 514 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Gabi3321g00035 514 Pfam Zinc-finger double-stranded RNA-binding 70 92 IPR022755 -
Gabi3321g00035 514 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 479 IPR031140 -
Gabi3321g00035 514 SUPERFAMILY beta-beta-alpha zinc fingers 69 166 IPR036236 -
Gabi3321g00035 514 MobiDBLite consensus disorder prediction 471 514 - -
Gabi3321g00035 514 MobiDBLite consensus disorder prediction 473 514 - -
Gabi3321g00035 514 MobiDBLite consensus disorder prediction 277 309 - -
Gabi3321g00035 514 SMART c2h2final6 70 92 IPR013087 -
Gabi3321g00035 514 SMART c2h2final6 111 141 IPR013087 -
Gabi3321g00035 514 SMART c2h2final6 146 166 IPR013087 -
Gabi3321g00035 514 MobiDBLite consensus disorder prediction 1 55 - -
Gabi3321g00035 514 FunFam protein indeterminate-domain 5, chloroplastic-like 124 203 - -
Gabi3321g00035 514 Gene3D Classic Zinc Finger 124 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3321g00035 Gabi-Chr3321 470089 480027 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3321g00035 10 210 IDZ Gene Family AT2G02070 79.147 4.78e-119 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3321g00035 zf-C2H2_jaz 3.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3321g00035 K25870 - gmx:100799389 577.015