Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3321g00026 ATGGAAAAGTTAGCTCCGGGTCCTATGTTGATGCACGCAACACTGGCGAGTTCGTTTTACGATTCGTCTTCGTCGTCGATGGCGAGCAAGAAGCGCGATCTGTCGTACGGCGTCGTTCGGAACGATGATAATTGGAACCCTAAGGAATGGAACTGGGACAGTGTGAGATTTGTAGGGAAACAGGTTAACAACAACGAAGTCGAAGAAGAAGAAGAAGAACAAGAAGAGAGTTTGCCTTTACGATTGAATCTCGGTGGTGGTTGTGGCGTGTCTAGACCTAACAAGAGGGTTCGTTCGGGTTCACCTTCATCTGGTGGTGGAACGGCGTCGTATCCTATGTGTCAGGTTGATAATTGTAGGGAAGATCTATCCAACGCTAAGGACTATCACCGACGCCATAAAGTGTGTGAACTTCACAGCAAAGCCTCCAAAGCCTTACTTGCTAACCAAATGCAACGTTTCTGCCAGCAGTGTAGTAGGTTTCACCCTCTCTCCGAATTTGACGAAGGAAAGCGCAGCTGTCGCCGTAGACTCGCCGGTCATAACCGTCGCCGGAGAAAAACCTTGCCGGAAGATGTTACCTCGACGTCTCCCCCTCCCGCCGCAGCAGCCGCCGCCGCCGCTAATTTAGAAATTTTCAACTTGTTGACCGCTATAGCCGGTGGTTCACAAGGAAAAATTGAGGAAAGAAGATTGGAAGTTCCGGATAGAGAGCAGCTTGTTCAGATTCTTAATAGGATACCTTTGCCTGGTGATCTTGCAGCGAAGTTGCTTGATGTTGGTAATTTCAATGGGAAAAAAGGTCATGTGCAAGTTCAAACGCAAAATTCAGCCTCCTATAATGGTCATGACCGAATGAACGAATTGAACCACGTGGCCTCTGGCCCCTTAACTAAGGACTTACTTGCTGTTCTTTCTGGCACTTTACCTGCGTCTGCTCCTGATCCTGTTGCTTCACTTGCTCAGAATCGCGGTGGCCGCGACAGTGAGGAACATCAATTCACTTCCGTTGGTGGAGAGAGAAGCAGTGGCAGTTCACAGTCTCCGGTTGAGGATTTGGACTGCCCGGAGGAGGATGTTCGAGTTAATTTACCGCTGCAACTTTTTAGCTCCTCTCCGGAAGAGGAAAGCGCGCCTAAGATGGCTTCATCTTCGCGAAAGTATTTGTCGTCAGATAGTAGTAACCCTGTGGAAGAGGGGTCGCCGTCTTCGTCTCCTCCTGTTGTGGAGATGCAGTTTGATTTGCAGGGTGGGACTAGAGGTATCAAGCCCGATAGCATTTCAATTGGAAGAGGAGTCAATGCAAATAAGGAAGCTAGCCAAAGTCATAGTTGTAATATCTCTCTTGATCTCTTTAAAGGGTCAAATAACAGGATGCAACAACCTAATTCACTTCAAAGTGTTCCATTTCAAGCTGGGTATACATCTTCCAGCTCTGATCATTCACCTCCCAGTCTGAATTCAGATGCTCAGGATCGGACGGGGAGAATAATGTTTAAACTATTTGACAAGCATCCTAGCCATTTCCCTGGAACACTGCGAACACAGATTTACAACTGGCTTTCCAATAGGCCATCAGACATGGAGAGCTACATAAGGCCTGGCTGTGTGGTCCTATCAATTTATGCAACAATGTCTTCTGCTTCCTGGGAGCAACTAGAGGAAAACTTCCTCCAACGTGTTCATTCTTTAATTCAAAATTCAGATTATGATTTTTGGAGAAATGGAAGGTTTCTAGTTCATTCTGGCAGTCAGTTAGCATCACACAAAGATGGAAAGATACGCTTATGCAAACCATGGAGAACATGGAGGTCTCCAGAGTTGATATCTGTGTCCCCTTTGGCAATTGTTAGTGGAGAAGAAACCTCTGTTTTGTTGAAGGGTAGAAACCTGTCAACTCCTGGCACAAAGATTCATTGCACAGGTACTGGCTGTTACACATCAGCCGAAGTTATAGGACCTGCCTATCCTGGTATGACTTATGATAAGATAAAACTCGGTGGTTTTAAAGTTCAGAATGCGTCTCCTGGTGTTTTGGGCCGCTGTTTCATTGAGGTTGAAAATGGTTTCAAGGGTGACAGTTTTCCAGTGATAATAGCTGATGCAACCATTTGCAAGGAATTGAAACCACTTGAGTCCGAATTTGATACGGAGGAAAAAATATGTGATGCTATTTCAGATGAGCACGAATGTCATTTTGGAAGGCCCAGGTCAAGGGAGGAGGCTTTGCACTTTCTGAATGAGCTTGGCTGGCTGTTCCAAAGAGAAAGGTTCTTGTATGAGTACGAGGTTCCAGATTATTCACTTGACAGGTTCCAATTTGTACTCACTTTTGCAGTGGAAAGAAACTGTTGCATGTTAGTCAAAACCCTTCTGGATATGCTGGTTAATAAACACTTTGAAGGGGGATGGTTATCAACAGGGTCAGTGGAGATGCTGAATGCTATCCAACTCTTAAATAGAGCAGTGAAAAGAAAGTACGTAAGCATGGTTGATTTGCTCATCCACTATTCTATACCTAGCAATAATGATACGTCCAGGATATATGTATTTCCACCGAATCTTGAGGGCCCTGGTGGTATTACACCGTTGCACTTGGCAGCATGTACATCGTTTTCTGAGGGTGTAATTGACTCTTTAACAAGTGACCCACAGGAGATTGGGTTGAAGTGCTGGGAATCCCTTGTGGATGCAAGTGGGCAGACTCCACGTGCCTATGCCATGATGAGGAATAATCACTCTTATAATGTGTTGGTTGCCCGTAAACTTGCTCATAGACAAAGAGGTGATGTGTTAGTAACAATTGACAATGAGATAGAGCAATCATCACTAAGAGTTGAGCTTAAGCAAAAGCTAAGTAACCAAGTCAAACAAGGTCAGAATTCTTGTGCCAAGTGTGCGATTGCAGAAATTCACTACAACAGAAGAGTTGCAGGTTCCCAGGGCATGCTTCACCGTCCTTTCATTCATTCAATTCTAGCTGTTGCTGCTGTTTGTGTGTGTGTTTGTCTGTTGTTTCGTGGAACTCCTTTCGTAGGCTCAGTTGCTCCCTTCAGGTGGGAAAATTTGCATTATGGCACATTCTAA 3087 0.4519 MEKLAPGPMLMHATLASSFYDSSSSSMASKKRDLSYGVVRNDDNWNPKEWNWDSVRFVGKQVNNNEVEEEEEEQEESLPLRLNLGGGCGVSRPNKRVRSGSPSSGGGTASYPMCQVDNCREDLSNAKDYHRRHKVCELHSKASKALLANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTLPEDVTSTSPPPAAAAAAAANLEIFNLLTAIAGGSQGKIEERRLEVPDREQLVQILNRIPLPGDLAAKLLDVGNFNGKKGHVQVQTQNSASYNGHDRMNELNHVASGPLTKDLLAVLSGTLPASAPDPVASLAQNRGGRDSEEHQFTSVGGERSSGSSQSPVEDLDCPEEDVRVNLPLQLFSSSPEEESAPKMASSSRKYLSSDSSNPVEEGSPSSSPPVVEMQFDLQGGTRGIKPDSISIGRGVNANKEASQSHSCNISLDLFKGSNNRMQQPNSLQSVPFQAGYTSSSSDHSPPSLNSDAQDRTGRIMFKLFDKHPSHFPGTLRTQIYNWLSNRPSDMESYIRPGCVVLSIYATMSSASWEQLEENFLQRVHSLIQNSDYDFWRNGRFLVHSGSQLASHKDGKIRLCKPWRTWRSPELISVSPLAIVSGEETSVLLKGRNLSTPGTKIHCTGTGCYTSAEVIGPAYPGMTYDKIKLGGFKVQNASPGVLGRCFIEVENGFKGDSFPVIIADATICKELKPLESEFDTEEKICDAISDEHECHFGRPRSREEALHFLNELGWLFQRERFLYEYEVPDYSLDRFQFVLTFAVERNCCMLVKTLLDMLVNKHFEGGWLSTGSVEMLNAIQLLNRAVKRKYVSMVDLLIHYSIPSNNDTSRIYVFPPNLEGPGGITPLHLAACTSFSEGVIDSLTSDPQEIGLKCWESLVDASGQTPRAYAMMRNNHSYNVLVARKLAHRQRGDVLVTIDNEIEQSSLRVELKQKLSNQVKQGQNSCAKCAIAEIHYNRRVAGSQGMLHRPFIHSILAVAAVCVCVCLLFRGTPFVGSVAPFRWENLHYGTF 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3321g00026 1028 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 46 821 IPR044817 GO:0003677
Gabi3321g00026 1028 MobiDBLite consensus disorder prediction 65 111 - -
Gabi3321g00026 1028 Gene3D - 105 175 IPR036893 GO:0003677|GO:0005634
Gabi3321g00026 1028 SUPERFAMILY Ankyrin repeat 775 916 IPR036770 -
Gabi3321g00026 1028 MobiDBLite consensus disorder prediction 336 350 - -
Gabi3321g00026 1028 MobiDBLite consensus disorder prediction 178 200 - -
Gabi3321g00026 1028 MobiDBLite consensus disorder prediction 96 111 - -
Gabi3321g00026 1028 Gene3D - 770 967 IPR036770 -
Gabi3321g00026 1028 MobiDBLite consensus disorder prediction 312 355 - -
Gabi3321g00026 1028 MobiDBLite consensus disorder prediction 469 490 - -
Gabi3321g00026 1028 SUPERFAMILY SBT domain 112 191 IPR036893 GO:0003677|GO:0005634
Gabi3321g00026 1028 FunFam Squamosa promoter-binding-like protein 14 105 175 - -
Gabi3321g00026 1028 ProSiteProfiles Zinc finger SBP-type profile. 111 188 IPR004333 GO:0003677
Gabi3321g00026 1028 MobiDBLite consensus disorder prediction 368 410 - -
Gabi3321g00026 1028 Pfam SBP domain 114 187 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3321g00026 Gabi-Chr3321 322072 327467 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3321g00026 7 1028 SBP-box Gene Family AT1G20980 51.346 0.0 933
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gabi3321g00026 SBP 1.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3321g00026 - - gmx:100819004 1513.43