LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3315g00001	ATGGCTGCCACTTTCTGCTATTCATATATTCTTCCACTATTTTTGTCCTGTCTTTTCTTTAACCTCCCTGCTAATTCAATTCACTTCAAAATTCCTCAATTTAATCCAGGTAATGCTAACATACTCTACCAAGGATCTGCAGGACTTCGTGATGGATCAGGTGTTGATTTCAACTTGAATCAGTATACGTGTCAAGTTGGAAGGGTCATCTATGCCAATAGGGTGTTACTTTGGGACTCTAGCACAGGTCAACTCACTGACTTCAAAACTCATTACACTTTCTTTATTGACACTCTAAATCAAACTCAGTATGGCCATGGACTTGCCTTTTTCCTTGCTGCTGTTGGAACTGAAATCCCACCCAATTCTTCTGGTGGCTTTCTGGGCCTATTCAACACCACAACTAAAGTTTCATCCCCTAGCCCAATTGTTCATATAGAGTTCGATTCTTACCCAGATCCTGGTTGGGGTGAGACCATGCAACATGTTGGGATCAACAATAATTCAATTTCTTCATCAGTTTTGACTCGTTGGAATGCTAGTCTACATAGTGGAGACACTGCTGATGTTTGGATTAGCTACAGTTCTACAACCAAGAATTTAAGCGTAACTTGGAAATACCAAAGAACTTCTGATCCTCAAGAAAATACCAGTCTTTCATATCCAATTGATTTAAGGACGGTCCTGCCTGAATGGGTTGCAATCGGATTTTCTGCTGCAACAGGTTCGTTAGGAGAAGGCCATAATCTTATGTCATGGGAGTTCAACTCAACTTTGGATAAAGGTGGAAATAATACAAAGAAGACAAGGTTGGTTGTGATACTAACTGTCTCTTGTGGTGTTCTAGTTGTCGTAGCAATTGCAGCAGCATGTGTGTTACTCTGGAGGAAGAAAAACAAAAACAAAAACAAAAAAGAAGAGGCTATGAATTTAACCTCGATCAATGATGACCTTGAAAGAGGAGCAGGACCAAGAAGGTTCTCACACAGAGAGCTTGCTTTGGTTACCAATAACTTCTCCAAGGACAGGAAATTAGGTCAAGGTGGGTTTGGAGCTGTTTACAAAGGCTACTTTGTTGATTTAGATTTAGCAGTTGCTGTGAAGAAAATATTAAAGGGTTCTAGACAGGGGAAGAAAGAGTATGTAACCGAAGTTAAAGTCATTAGCCAACTGAGACACAGGAATCTTGTGCAGCTCTTGGGTTGGTGCCATGACAGAGGTGAGTTTATGCTTGTTTATGAGTTCATGCCAAATGGTAGCCTTGATTCTCATTTATTCGGTAAAAGGGCACCTCTTCCTTGGAGTGTGAGGTACAAGATAGCTCTTGGATTGGCCTCTGCAGTGCTCTATCTACATGAAGAATGGGAACGATGTGTGGTGCATAGGGATATCAAATCAAGCAATGTTATGCTAGATTCAAGTTTCAATGTCAAGCTTGGAGATTTCGGGTTGGCTAAGCTCATGGACCATGAAATTGGGCCACAAACAACAGGGTTGGCTGGAACATTGGGCTATTTGGCTCCTGAATATGTGAGTACAGGTAGGGCAAGTAAGGAGTCAGATGTCTATAGTTTTGGGGTTGTTGCCTTGGAGATTGCTACTGGTAAGAAAGCCGTTGATGTTATGAAGGACAAAGATGATGAAATGGGATTGATTGAGTGGGTTTGGGGTCATTATGGCAGAGGGGAGCTGCTTGTGGCAATGGATGAGATTTTGAAGAAGGATTTTGATGAGAAACAAGGAGAGTGTTTGATGATTGTGGGATTGTGGTGTGCTCACCCAGACGCAAATCTGAGACCATCAATACGACAAGCAATTCAATTGCTTAATTTTGAGGCTGCTATGCCGAACCTTCCACCAAAGAGGCCTGTTCCAACATATCATGCTCCAACATATCATGCTCCTGCGCCATCTGTACTCTCAGGAGCAGCAGCTTCCACAACCACAATCTTTCAGATTGGTCGTTGA	1968	0.4207	MAATFCYSYILPLFLSCLFFNLPANSIHFKIPQFNPGNANILYQGSAGLRDGSGVDFNLNQYTCQVGRVIYANRVLLWDSSTGQLTDFKTHYTFFIDTLNQTQYGHGLAFFLAAVGTEIPPNSSGGFLGLFNTTTKVSSPSPIVHIEFDSYPDPGWGETMQHVGINNNSISSSVLTRWNASLHSGDTADVWISYSSTTKNLSVTWKYQRTSDPQENTSLSYPIDLRTVLPEWVAIGFSAATGSLGEGHNLMSWEFNSTLDKGGNNTKKTRLVVILTVSCGVLVVVAIAAACVLLWRKKNKNKNKKEEAMNLTSINDDLERGAGPRRFSHRELALVTNNFSKDRKLGQGGFGAVYKGYFVDLDLAVAVKKILKGSRQGKKEYVTEVKVISQLRHRNLVQLLGWCHDRGEFMLVYEFMPNGSLDSHLFGKRAPLPWSVRYKIALGLASAVLYLHEEWERCVVHRDIKSSNVMLDSSFNVKLGDFGLAKLMDHEIGPQTTGLAGTLGYLAPEYVSTGRASKESDVYSFGVVALEIATGKKAVDVMKDKDDEMGLIEWVWGHYGRGELLVAMDEILKKDFDEKQGECLMIVGLWCAHPDANLRPSIRQAIQLLNFEAAMPNLPPKRPVPTYHAPTYHAPAPSVLSGAAASTTTIFQIGR	655

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3315g00001	655	SMART	serkin_6	339	611	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3315g00001	655	PANTHER	-	56	613	-	-
	Gabi3315g00001	655	CDD	lectin_legume_LecRK_Arcelin_ConA	27	259	IPR001220	GO:0030246
	Gabi3315g00001	655	SUPERFAMILY	Protein kinase-like (PK-like)	323	630	IPR011009	-
	Gabi3315g00001	655	Pfam	Protein kinase domain	339	607	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3315g00001	655	FunFam	L-type lectin-domain containing receptor kinase IX.1	324	415	-	-
	Gabi3315g00001	655	SUPERFAMILY	Concanavalin A-like lectins/glucanases	25	262	IPR013320	-
	Gabi3315g00001	655	CDD	STKc_IRAK	345	610	-	-
	Gabi3315g00001	655	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	459	471	IPR008271	GO:0004672\|GO:0006468
	Gabi3315g00001	655	ProSiteProfiles	Protein kinase domain profile.	339	618	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3315g00001	655	Pfam	Legume lectin domain	27	265	IPR001220	GO:0030246
	Gabi3315g00001	655	Gene3D	Transferase(Phosphotransferase) domain 1	416	630	-	-
	Gabi3315g00001	655	Gene3D	-	24	281	-	-
	Gabi3315g00001	655	ProSitePatterns	Legume lectins alpha-chain signature.	229	238	IPR000985	-
	Gabi3315g00001	655	ProSitePatterns	Protein kinases ATP-binding region signature.	345	369	IPR017441	GO:0005524
	Gabi3315g00001	655	FunFam	Lectin-domain containing receptor kinase A4.3	416	629	-	-
	Gabi3315g00001	655	FunFam	L-type lectin-domain containing receptor kinase IX.1	25	268	-	-
	Gabi3315g00001	655	Gene3D	Phosphorylase Kinase; domain 1	324	415	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3315g00001	Gabi-Chr3315	32513	34492	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3315g00001	3	628	Receptor kinase-like Gene Family	AT5G10530	57.390	0.0	730

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Gabi3315g00001		Pkinase	6.3e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3315g00001	-		-	qsa:O6P43_025188	872.848