Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3313g00001 ATGATATCCAGCTATGATAAGATTTTCATTTGGTTTCCTTTTTATGCTTTTGTTGTTCCATCATTTTCTTCTGCTGCTGAACGAGACTATTATCGAGTTCTTGGTGTTCCTGAAACTGCCAGTCAGGATGAGATAAAGAAGGCATTTCACTTGCTTGCTAAAAAGTACCATCCAGATGCAAGTAAGAATAATCCATCTTCGAAGAGGAAATTTCTTGATATAAGAGAAGAATATGAGACATTGAGAGACTCTAAAAAAAGGGCAGAGTATGACAAGATGCGTAATCGTGGTTCAGAGAACATTGAATACGGTGATGATGATGCAGAAAGGTTTAGAAATGCTTATCGTTCTCATTTTTCTGATTCATTTCATAAAGTGTTCTCTGAGATATTTGAAGAAGCAACTCAATTCTCGTCAAATATAGAGGTGGAGTTGACTCTTACTTTCTCAGAAGCTGCAAGAGGATGCACCAAACATGTGTCGTTTGATGCGTTAATTCCCTGTGATTATTGCAATGGGCGGGGCTATCCGCAAGATGCCAACCCTAAAGTTTGTCCAACATGCAGGGGCTCAGGTCGAGTTACAATCCCTCCATTTACTTCAACATGCATTACTTGTAAAGGATCAGGCCGTATAATTAAGGACTTTTGTATGTCATGTAGAGGATCTGGGGTGGTTAAAGGGATTAAAGTTACAATACCATCAGGAAATCTCACAGAGAGTGATGATCCGAGCACTGTAAAACAAGCTAGGAGCTCGGAGGATGGCAAACAGTGGGAGGAAGCTATGAAAAGAGATGAAGGTAAATCGTTGTCGATCTTGCAGGAGCGTCAGAGAGCAAACAAGAAGCAAGAAGAAATCAAGAATCATGTCTTCAACAAGAAGTAA 888 0.3986 MISSYDKIFIWFPFYAFVVPSFSSAAERDYYRVLGVPETASQDEIKKAFHLLAKKYHPDASKNNPSSKRKFLDIREEYETLRDSKKRAEYDKMRNRGSENIEYGDDDAERFRNAYRSHFSDSFHKVFSEIFEEATQFSSNIEVELTLTFSEAARGCTKHVSFDALIPCDYCNGRGYPQDANPKVCPTCRGSGRVTIPPFTSTCITCKGSGRIIKDFCMSCRGSGVVKGIKVTIPSGNLTESDDPSTVKQARSSEDGKQWEEAMKRDEGKSLSILQERQRANKKQEEIKNHVFNKK 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3313g00001 295 Gene3D - 168 224 - -
Gabi3313g00001 295 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 155 226 IPR036410 -
Gabi3313g00001 295 SMART dnaj_3 28 86 IPR001623 -
Gabi3313g00001 295 CDD DnaJ_zf 168 224 IPR001305 GO:0031072|GO:0051082
Gabi3313g00001 295 CDD DnaJ 29 83 IPR001623 -
Gabi3313g00001 295 SUPERFAMILY Chaperone J-domain 26 124 IPR036869 -
Gabi3313g00001 295 Gene3D - 140 238 - -
Gabi3313g00001 295 Pfam DnaJ central domain 168 224 IPR001305 GO:0031072|GO:0051082
Gabi3313g00001 295 ProSiteProfiles Zinc finger CR-type profile. 155 229 IPR001305 GO:0031072|GO:0051082
Gabi3313g00001 295 ProSiteProfiles dnaJ domain profile. 29 94 IPR001623 -
Gabi3313g00001 295 Pfam DnaJ domain 29 91 IPR001623 -
Gabi3313g00001 295 PRINTS DnaJ domain signature 31 49 IPR001623 -
Gabi3313g00001 295 PRINTS DnaJ domain signature 66 86 IPR001623 -
Gabi3313g00001 295 PRINTS DnaJ domain signature 86 105 IPR001623 -
Gabi3313g00001 295 PRINTS DnaJ domain signature 49 64 IPR001623 -
Gabi3313g00001 295 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 22 256 - -
Gabi3313g00001 295 MobiDBLite consensus disorder prediction 247 295 - -
Gabi3313g00001 295 Gene3D DnaJ domain 25 139 IPR036869 -
Gabi3313g00001 295 MobiDBLite consensus disorder prediction 236 295 - -
Gabi3313g00001 295 FunFam Molecular chaperone DnaJ 160 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3313g00001 Gabi-Chr3313 20688 34527 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3313g00001 19 96 C2H2 Transcription Factor Family AT1G74250 33.735 3.23e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3313g00001 - - gmx:100799962 382.489