Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3312g00034 ATGGAGGATCATCCTCCTCCTCTTTCATACGTCGTCGTTGCGTGTGATGCCACCAAGGACGGCAATGAGCACGACATCAAGCTCGTCGTCGATCATGTTCGGGCCAGGGGTGTCATTCTCTCTGCTGGTGAAAGGTTGCTTGTGCTCTGCGTTTTGCATAAGGTGCCTCACCCCATGGGGTACCAGACATTAGCATGCCCCGAGTCTTTTGCTGGCACGAACTTTCGTGCAATGGAGGAAGAAGTCAGAAAGAAAGTTAATGTATATGCAAGTGAGCTTTTATCAAGTTATGAAGATTTTGAAAATGAAGGGGTTAGCATCGAAGTTAAAGTCACCGCGGGTTTTCCAATTAGACAGGTTATTTCACAAGAGGTTAAAAACTACAATGCATCTTGGATTGTACTTGATAGACACCTAAGGCGTGACCTGAGATTCTACAACAAGTTGCCATGCAAGGTGGCATTGGTTAAAGATGACTTGTCTGTGGATATCTGGAGATCTCATTATATACAAAACACAAATGTCACAGAAACAAATATTGAAGACATTGATCAATCTGTTATCTCTGCCAAAAGTTATCCCCATTCCATAACTTCCTCTGATAGCTCGGGTACTATTAAGAGCTATATGAAGTATACTAACAGGTCAAGGGAGCACAGCTCTTCATTAGATTTTGGATCTTCTTCTAAGCAAGAAAGATCAGGCATAAGCATCAAAGGAGATTATAGTCATTCCATTACTTCTCAGATTGGTCATATGAAATTCCAAGTTGGCTTTCTACCAAAATCTTCAGATGCACCAATTCTTTGTGCTGGCTGTGGGGCAAGGACTGAGTTGACTATCAAGGAATCAATGAGGTTCAGCTATTCTGACATACAGCTTGCAACAAATGATTTTTCAAAGGAAAGCTTATTAGGTGAAGGTGGATATGGTCATGTATACAAGGGCGTGCTTAAAGATGGACAGCAAATAGCAGCAAAAGTAAGGAAAGAAGAAAGCACACAAGGATTTTCTGAATTTCATTCTGAGGTGTATGTCTTAAGTTTTGCTCGACACAGGAATATAGTGATGCTGTTGGGTTACTGTTGCAAAGAAAAGAAAAATATTCTGATATATGAATATATTTGCAATAAGTCTCTTTATTGGCATTTATTTGAAAATAATGCAGAAGTTCTTGAGTGGCAACAAAGGTATGCTATTGCCATTGGAACTGCAAAGGGATTGCGTTTTCTACATGAGGAATGCCGTGGTGGTCCTATTATTCATCGGGACATGAGACCAAGCAATATACTCCTCACTCATGATTTTGTTCCCATGCTAGGTGACTTTGGTCTTGCCAAATGGAAGAATGGTGATGATACTCTGCAAACAAGGAATATAATGGGCACATTAGGATACCTTGCTCCTGAATATGCTGAAGACGGTATTGTTTCTGTGCGGACAGATGTGTATTCTTATGGTGTTATTCTGTTACAATTGATATCAGGACGCAAGGTTGGCAATTCCAATAATCCAGAACAACAACAATCTCTCCGACAATGGGCTGAACCAATGATTGAGAAGTTGGCTTTACATGAACTAATTGACAGTCGTCTAGGGGAATCATATGACACATATGAACTATACCTCATGGCTAAAGCAGCATATTTCTGTGTGCAAAGAAAGCCTGAGATGCGTCCATCAATGGGAGAGGTTGTGCGCCTTCTTGAGGGAGAAAGTAACCATTTTCACTCCATGGAAGATCAATTTGCACCTGATTATAACAGTTGA 1770 0.4079 MEDHPPPLSYVVVACDATKDGNEHDIKLVVDHVRARGVILSAGERLLVLCVLHKVPHPMGYQTLACPESFAGTNFRAMEEEVRKKVNVYASELLSSYEDFENEGVSIEVKVTAGFPIRQVISQEVKNYNASWIVLDRHLRRDLRFYNKLPCKVALVKDDLSVDIWRSHYIQNTNVTETNIEDIDQSVISAKSYPHSITSSDSSGTIKSYMKYTNRSREHSSSLDFGSSSKQERSGISIKGDYSHSITSQIGHMKFQVGFLPKSSDAPILCAGCGARTELTIKESMRFSYSDIQLATNDFSKESLLGEGGYGHVYKGVLKDGQQIAAKVRKEESTQGFSEFHSEVYVLSFARHRNIVMLLGYCCKEKKNILIYEYICNKSLYWHLFENNAEVLEWQQRYAIAIGTAKGLRFLHEECRGGPIIHRDMRPSNILLTHDFVPMLGDFGLAKWKNGDDTLQTRNIMGTLGYLAPEYAEDGIVSVRTDVYSYGVILLQLISGRKVGNSNNPEQQQSLRQWAEPMIEKLALHELIDSRLGESYDTYELYLMAKAAYFCVQRKPEMRPSMGEVVRLLEGESNHFHSMEDQFAPDYNS 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3312g00034 589 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
Gabi3312g00034 589 Pfam Protein kinase domain 300 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3312g00034 589 SUPERFAMILY Protein kinase-like (PK-like) 281 570 IPR011009 -
Gabi3312g00034 589 Gene3D Phosphorylase Kinase; domain 1 272 374 - -
Gabi3312g00034 589 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 180 576 - -
Gabi3312g00034 589 CDD STKc_IRAK 305 571 - -
Gabi3312g00034 589 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 271 374 - -
Gabi3312g00034 589 ProSiteProfiles Protein kinase domain profile. 299 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3312g00034 589 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 375 579 - -
Gabi3312g00034 589 Gene3D HUPs 8 151 IPR014729 -
Gabi3312g00034 589 Gene3D Transferase(Phosphotransferase) domain 1 376 587 - -
Gabi3312g00034 589 ProSitePatterns Tyrosine protein kinases specific active-site signature. 420 432 IPR008266 GO:0004672|GO:0006468
Gabi3312g00034 589 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 42 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3312g00034 Gabi-Chr3312 425073 428572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3312g00034 287 570 Trihelix Transcription Factor Family AT5G38560 44.828 6.42e-79 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Gabi3312g00034 Pkinase 3.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3312g00034 - - vun:114163670 974.541