Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3312g00018 ATGGCTATGAACTCAAAGCAGCTTCTGCAGCTGCTAATTGTTGTGATCATTTTTTCAGCAACTCAAACTCAAACTCAATCCATTCCAATACCAAACCCGAACTGCCCCAACAACTGTGGCTCCCTCACCATTCCCTTCCCATTTGGCACCACTGAGGAATGTTCCCTAGATAGCTCATTTCTCATCTCATGCAACAAAACCTCTTCACAATACACACCTTTCTTGAGAAAAAGTAATATAACTGTGCTCAATATCTCACTCAACGGTGAAATGCAGATTTCATATCCTGTAGGCAGCGATTGCTACACTGTAGGAGGCAAGCGTGTGAACCAAACATTTCATGACCTCAAACTCAAATATTTTCACATCTCTTCAAAGCGAAACAAGTTGACCGTGGTTGGTTGTGACACGCTTGGACTTGTTGTGGGGATTGATTCTGATCAGGGAAAAAACTACACCACTGGATGTGTATCTTTGTGCAATAGGCTTGATGATATTGTAGCTAATGGTTCTTGCTCTGGCACTGGTTGTTGTGAGACTTCAATACCTGAAGGTCTATCAGGTTTCTCCTTTGGTTCTGGCAGCGTGTTTAACCATACCCGGGTGCTTGACTTCAATCCTTGCGGTTATACTTTTCTGGCTGAAGATGGAGCCTACAACTTCTCCTCCACAGACCTAGTCAACTTTGAGAAGACAACGTTTCCTGTTGTGTTGGATTGGGAAGTGGGGAACCAAACGTGTCAAGAAGCTCAGAAAAATGTTTCAAGTTATGCCTGCGTGTCACAGAACAGTGAATGTTTCAATTCAATGGATGGACCTGGTTACCTTTGCAATTGCTCTCATGGTTTTCAGGGAAACCCTTACCTCCTTAACGGTTGCCAAGATATTAATGAATGCATGGTATCAAACGACTGCATTGCTGGGGCAAAATGCATCAACGTTCTTGGGGGCTATAACTGTTCTTGTCCGAAAGGATATGAAGGAGATGGGAAAACAACATGCCTTCGCAAATCCAGGAGAGATATCATACTGATGATTGCTTTGAGTGTTAGTGTAATGGTCATAGCACTGCTCATGGGAAGCTTTTATGTGTATTGGGCATTGAAGAAGAGAAAGCTCATCAAACTTAAAGAACAATTTTTTCAACAAAATGGTGGCTTATTACTCCAACAACAGGTAGCAAGGCATAGAGGGTCAACTGAAACAGCTAAAGTCTTCACTGAGGAGGAGTTAAAGGATGCCACCAACAACTTTGATGAAGGAAGAGTCCTAGGCCAAGGTGGCCATGGAACAGTTTACAGAGGAATATTACAGGATAACAGAACTGTAGCAATAAAGAAGTCCAAAATAAGTGACCCAAGCCAGATTGAGCAATTCATCAATGAAGTGATCATTCTTTCCCAAATAAACCATAGGAATGTGGTAAAGCTCTTGGGCTGTTGTCTAGAGACACAAGTTCCCTTGCTTGTTTATGAATTCATCCCCAATGGTACTATCTATGAGCATCTTCATGATCAAAGCAATTCTGTAAAACTTACATGGAAAACAAGATTGAGAATAGCAACAGAAGCTGCGGGGGCCCTGGCATACTTGCATTCTGCTACTTCTACACCAATCATACACAGAGATGTGAAAACTACAAATATACTACTTGATCATAATCTCATTGCAAAGGTTTCTGATTTTGGAGCTTCAAGGATTGTTCCTCTTGATAAAAATCAGCTAACCACTTTGGTGCAGGGGACACTGGGTTATCTTGATCCAGAATACTTTCAGACAAGCCATTTAACAGAGAAGAGTGATGTCTATAGCTTTGGGGTTGTCTTGGCAGAGTTACTGACAGGAAAGAAGGCACTCTCATTTGAAAGGCCAGAGGAAGATAGAAACCTTGCAGTGTACTTCCTTTCTTCAATGAAAGAGGGTATGTTACTTAACATTGTGGACAGCCATATAATAGATGAGGCAAATGTTGAGCAACTAAGGGAAGTTTCCAATATTGCAAAAAGGTGTTTAAGGGTGAGGGGAGAGGAGAGACCCACCATGAAAGAAGTGGCAAGGGAACTTGAGGGGCTAAAAGTTATGGAAAAGCAACGGTGGGAAAGTGTCAATTTGTCTTCAGAAGAGAACTTGCTCAAAGCAGAACCATCTGCTTTCAATGTGGAAGATAGTGCTGGTGGAAATGGCATTAGATATGGCTTTGATAGCTTAAACCGGATTTCGATGTCGCTGGGTGGTGGAAGATGA 2244 0.4207 MAMNSKQLLQLLIVVIIFSATQTQTQSIPIPNPNCPNNCGSLTIPFPFGTTEECSLDSSFLISCNKTSSQYTPFLRKSNITVLNISLNGEMQISYPVGSDCYTVGGKRVNQTFHDLKLKYFHISSKRNKLTVVGCDTLGLVVGIDSDQGKNYTTGCVSLCNRLDDIVANGSCSGTGCCETSIPEGLSGFSFGSGSVFNHTRVLDFNPCGYTFLAEDGAYNFSSTDLVNFEKTTFPVVLDWEVGNQTCQEAQKNVSSYACVSQNSECFNSMDGPGYLCNCSHGFQGNPYLLNGCQDINECMVSNDCIAGAKCINVLGGYNCSCPKGYEGDGKTTCLRKSRRDIILMIALSVSVMVIALLMGSFYVYWALKKRKLIKLKEQFFQQNGGLLLQQQVARHRGSTETAKVFTEEELKDATNNFDEGRVLGQGGHGTVYRGILQDNRTVAIKKSKISDPSQIEQFINEVIILSQINHRNVVKLLGCCLETQVPLLVYEFIPNGTIYEHLHDQSNSVKLTWKTRLRIATEAAGALAYLHSATSTPIIHRDVKTTNILLDHNLIAKVSDFGASRIVPLDKNQLTTLVQGTLGYLDPEYFQTSHLTEKSDVYSFGVVLAELLTGKKALSFERPEEDRNLAVYFLSSMKEGMLLNIVDSHIIDEANVEQLREVSNIAKRCLRVRGEERPTMKEVARELEGLKVMEKQRWESVNLSSEENLLKAEPSAFNVEDSAGGNGIRYGFDSLNRISMSLGGGR 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3312g00018 747 FunFam Wall-associated receptor kinase 2 388 493 - -
Gabi3312g00018 747 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 311 322 IPR000152 -
Gabi3312g00018 747 SMART serkin_6 418 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3312g00018 747 FunFam Fibrillin 2 294 334 - -
Gabi3312g00018 747 SUPERFAMILY Protein kinase-like (PK-like) 402 693 IPR011009 -
Gabi3312g00018 747 FunFam Wall-associated receptor kinase 2 494 711 - -
Gabi3312g00018 747 CDD EGF_CA 295 329 - -
Gabi3312g00018 747 Pfam Protein tyrosine and serine/threonine kinase 421 688 IPR001245 GO:0004672|GO:0006468
Gabi3312g00018 747 SUPERFAMILY EGF/Laminin 294 332 - -
Gabi3312g00018 747 FunFam Wall-associated receptor kinase 2 245 293 - -
Gabi3312g00018 747 ProSiteProfiles Protein kinase domain profile. 418 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3312g00018 747 ProSiteProfiles EGF-like domain profile. 295 335 IPR000742 -
Gabi3312g00018 747 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 695 IPR045274 GO:0007166
Gabi3312g00018 747 SMART egfca_6 295 335 IPR001881 GO:0005509
Gabi3312g00018 747 ProSitePatterns Calcium-binding EGF-like domain signature. 295 320 IPR018097 GO:0005509
Gabi3312g00018 747 Gene3D Transferase(Phosphotransferase) domain 1 494 712 - -
Gabi3312g00018 747 SMART egf_5 246 294 IPR000742 -
Gabi3312g00018 747 SMART egf_5 298 335 IPR000742 -
Gabi3312g00018 747 Gene3D Phosphorylase Kinase; domain 1 389 493 - -
Gabi3312g00018 747 ProSitePatterns Protein kinases ATP-binding region signature. 424 447 IPR017441 GO:0005524
Gabi3312g00018 747 Gene3D Laminin 244 335 - -
Gabi3312g00018 747 ProSitePatterns EGF-like domain signature 2. 320 334 IPR000742 -
Gabi3312g00018 747 Pfam Calcium-binding EGF domain 295 334 IPR001881 GO:0005509
Gabi3312g00018 747 CDD STKc_IRAK 424 691 - -
Gabi3312g00018 747 Pfam Wall-associated receptor kinase galacturonan-binding 35 89 IPR025287 GO:0030247
Gabi3312g00018 747 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3312g00018 Gabi-Chr3312 315025 317752 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3312g00018 11 741 Receptor kinase-like Gene Family AT1G21250 46.061 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gabi3312g00018 PK_Tyr_Ser-Thr 2.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3312g00018 - - gmx:100798027 1078.93