Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3312g00017 ATGGCTATGCACTCAAAGCAGCTGCTAATTGTTGTGATAATTTTTTCTGCAACTCAAACTCAATCCATTCCAATGCCAAACCCGAACTGCCCCAACAACTGTGGCTCCCTCACCATTCCCTTCCCATTTGGCACCACCGAAGAATGTTCACTAGATAGCTCATTTCTCATCACATGCAACCAAACCTCTTCACCACCCACACCTTTCTTGAGAGAAAGTAATACAACTGTGCTAAATATCTCACTCAACGGTGAACTGCAGATTTCATATCCTGTAGCCAGCGATTGCTACACTGTAGGAGGCAAGCGTGTGAACCAAACATTTCAAGACCTCAATCTTAAATATTTTCACATCTCTTCAAAGCGAAACAAGTTGACCGTGCTTGGTTGTGACACGCTTGGGCTTGTTCTCGGAGTTGAATCTGATCAGGGAAAGAATTACACCACTGGATGTGTATCTTTGTGCAATAGGCTTGATGATATTGTGGCTAATGGTTCTTGCTCTGGCACTGGTTGTTGTGAGACTTCAATACCTGAAGGTCTATCAGGTTTCTCCTTCGGTTCTGGGAGCGTGTTTAATCATACTCGTGTGCTTGACTTCAATCCTTGCGGTTATACTTTTCTGGCTGAAGATGGAGCCTACAACTTCTCCTCCACAGACCTAGTCAACTTTGAGAAGAAAACGTTTCCTGTTGTGTTGGATTGGGAAGTGGGGAACCAAACGTGTCAAGAAGCTCAGAAAAATGTTTCAAGTTATGCCTGCGTGTCACAGAACAGTGAATGTTTCAATTCAGTGGATGGACCTGGTTATCTTTGCAACTGCTCTCATGGTTTTCAGGGAAACCCTTACCTCCTTAACGGTTGCCAAGATATTAATGAATGCATGGTATCAAACGACTGCATTGCTGGGGCAAAATGCATCAACTTTATTGGGGGCTACAACTGTTCTTGTCCGAAAGGATATGAAGGAGATGGGAAAACAACATGCCTTCGCAAATCCGGGAGAGATATCATACTGATTATTGCTTTGAGTGTGAGTGTAATGGTCATAGCACTGCTCATTGGAAGCTTTTATGTGTACTGGGCATTGAAGAAGAGGAAGCTCATGAAACTTAAAGAACAATTTTTTCAACAAAATGGTGGCTTATTATTCCAACAACAGATAGCAAGGCATAGAGGGTCAACTGAAACAGCTAAAGTCTTCACTGAGGCGGAGTTAAAGGATGCCACCAACAACTTTGATGAAGGAAGAGTCCTAGGCCAAGGTGGCCACGGAACAGTTTACAGAGGAATATTACATGATAACAGAACTGTAGCAATAAAAAAGTCCAAAATCAGTGACCCAAGCCAGATTGAGCAATTCATCAATGAAGTGATCGTTCTTTCCCAAATAAACCATAGGAATGTGGTAAAGCTCTTGGGCTGTTGTCTAGAGACACAAGTTCCCTTGCTTGTTTATGAATTCATCCCCAATGGTACTATCTATGAGCATCTTCATGATCAAAGCAATTCTGTAAAACTTAAATGGAAAACAAGATTGAGAATAGCAACAGAAGCTGCGGGGGCCCTGGCATACTTGCATTCTGCTATTTCTACACCAATCATACACAGAGATGTGAAAACTACAAATATACTACTTGATCATAATCTCATTGCAAAGGTTTCTGATTTTGGAGCTTCAAGGATTGTTCCTCTTGATAAAAATCAGCTAACCACTTTGGTGCAGGGGACACTGGGTTATCTTGATCCAGAATACTTTCAGACAAGCCATTTAACAGAGAAGAGCGATGTCTATAGTTTTGGGGTTGTCTTGGCAGAGCTAATCACTGGAAAGAAGGCACTCTCATTTGCAAGGCGAGAGGAAGATAGAAACCTTGCAGTGTACTTCCTTTCTTCAATGAAAGAGGGTCGGTTAATTAACATTGTGGACAGCCACATAATAGATGAGGCAAATATTGAGCAACTAACGGGAGTTGCCCATATTGCCAAACGGTGTTTAAAGGTGAACAGAGAAGAAAGACCCACCATGAAAGAAGTGGCAATGGAACTTGAGGGATTGAAAGTAGTTGAAAAGCACCAGTGGGAAAGTGTTAATTTGTCTTCAGAAGAGACTGAAAAGTTGCAAAAAGCAACACCATCTGTTTTCAATGTGGAAGATGGCGCTGGGGGGAGTGGCATTAGTTCTGGCTTTGATAGCTTAAACCGGATTTCGTTGTCATTGGGTAGTGGTGGAAGATAA 2238 0.4218 MAMHSKQLLIVVIIFSATQTQSIPMPNPNCPNNCGSLTIPFPFGTTEECSLDSSFLITCNQTSSPPTPFLRESNTTVLNISLNGELQISYPVASDCYTVGGKRVNQTFQDLNLKYFHISSKRNKLTVLGCDTLGLVLGVESDQGKNYTTGCVSLCNRLDDIVANGSCSGTGCCETSIPEGLSGFSFGSGSVFNHTRVLDFNPCGYTFLAEDGAYNFSSTDLVNFEKKTFPVVLDWEVGNQTCQEAQKNVSSYACVSQNSECFNSVDGPGYLCNCSHGFQGNPYLLNGCQDINECMVSNDCIAGAKCINFIGGYNCSCPKGYEGDGKTTCLRKSGRDIILIIALSVSVMVIALLIGSFYVYWALKKRKLMKLKEQFFQQNGGLLFQQQIARHRGSTETAKVFTEAELKDATNNFDEGRVLGQGGHGTVYRGILHDNRTVAIKKSKISDPSQIEQFINEVIVLSQINHRNVVKLLGCCLETQVPLLVYEFIPNGTIYEHLHDQSNSVKLKWKTRLRIATEAAGALAYLHSAISTPIIHRDVKTTNILLDHNLIAKVSDFGASRIVPLDKNQLTTLVQGTLGYLDPEYFQTSHLTEKSDVYSFGVVLAELITGKKALSFARREEDRNLAVYFLSSMKEGRLINIVDSHIIDEANIEQLTGVAHIAKRCLKVNREERPTMKEVAMELEGLKVVEKHQWESVNLSSEETEKLQKATPSVFNVEDGAGGSGISSGFDSLNRISLSLGSGGR 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3312g00017 745 SMART egf_5 241 289 IPR000742 -
Gabi3312g00017 745 SMART egf_5 293 330 IPR000742 -
Gabi3312g00017 745 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 692 IPR045274 GO:0007166
Gabi3312g00017 745 Pfam Wall-associated receptor kinase galacturonan-binding 30 84 IPR025287 GO:0030247
Gabi3312g00017 745 SMART egfca_6 290 330 IPR001881 GO:0005509
Gabi3312g00017 745 CDD STKc_IRAK 419 686 - -
Gabi3312g00017 745 ProSitePatterns Protein kinases ATP-binding region signature. 419 442 IPR017441 GO:0005524
Gabi3312g00017 745 Gene3D Phosphorylase Kinase; domain 1 385 488 - -
Gabi3312g00017 745 FunFam Fibrillin 2 289 329 - -
Gabi3312g00017 745 SUPERFAMILY EGF/Laminin 289 327 - -
Gabi3312g00017 745 FunFam Wall-associated receptor kinase 2 240 288 - -
Gabi3312g00017 745 SUPERFAMILY Protein kinase-like (PK-like) 397 684 IPR011009 -
Gabi3312g00017 745 ProSitePatterns EGF-like domain signature 2. 315 329 IPR000742 -
Gabi3312g00017 745 FunFam Wall-associated receptor kinase 2 383 488 - -
Gabi3312g00017 745 CDD EGF_CA 290 324 - -
Gabi3312g00017 745 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 306 317 IPR000152 -
Gabi3312g00017 745 Pfam Protein tyrosine and serine/threonine kinase 416 683 IPR001245 GO:0004672|GO:0006468
Gabi3312g00017 745 FunFam Wall-associated receptor kinase 2 489 706 - -
Gabi3312g00017 745 Gene3D Laminin 239 330 - -
Gabi3312g00017 745 Pfam Calcium-binding EGF domain 290 329 IPR001881 GO:0005509
Gabi3312g00017 745 ProSiteProfiles Protein kinase domain profile. 413 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3312g00017 745 ProSitePatterns Serine/Threonine protein kinases active-site signature. 534 546 IPR008271 GO:0004672|GO:0006468
Gabi3312g00017 745 SMART serkin_6 413 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3312g00017 745 Gene3D Transferase(Phosphotransferase) domain 1 489 710 - -
Gabi3312g00017 745 ProSiteProfiles EGF-like domain profile. 290 330 IPR000742 -
Gabi3312g00017 745 ProSitePatterns Calcium-binding EGF-like domain signature. 290 315 IPR018097 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3312g00017 Gabi-Chr3312 287247 289970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3312g00017 8 738 Receptor kinase-like Gene Family AT1G21250 45.939 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gabi3312g00017 PK_Tyr_Ser-Thr 6.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3312g00017 - - gmx:100798027 1070.07