Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3312g00016 ATGGCTAAACAGCTGCTGCAGCTGCTAATTGTTGTGATCATTTTTTCAGCGACTCAAACTCAAACTCAATCCATTCCAATGCAAAAACCGAACTGCCCCAACAACTGTGGCTCCCTTACCATTCCCTTCCCATTTGGCACCACCGAGGAATGTTCACTAGATAGCTCATTTATCATCACATGCAACCAAACCTCTTCACCACCCACACCTTTCTTGAGCGAAAGTAATACAACTGTGCTAAATATCTCACTCAACGGTGAACTGCAGATTTCATATCCTGTAGCCAGCGATTGTTACACTGAAGGAGGCAAGCGTGTGAACCAAACAATTCAAGACCTCAATCTGAAACATTTTCACATCTCTTCAAAACGAAACAAGTTCACCGTGGTTGGTTGTGACACGCTTGCACTTGTTCTCGGAGTTGAATCTGATCAGGGAAAGAACTACACCACTGGATGTATCTCTCTGTGCAATAGGCGTGATGATATTGTAGCTAATGGTTCTTGCTCTGGCACTGGTTGTTGTGAGACTTCAATACCTGAAGGTCTATCGGGTTTTGCCTATATTTCTACTAGCTTGAATAACCACACCGACGTGCTTGACTTCAATCCATGCGGTTATGCTTTTCTGGTGGAAGAAGGAGCCTACAGCTTCTTGTCCACAGACCTCGTCCACTTTGAGAAGACAACGTTTCCTGTTGTGTTGGATTGGGCAGTGGGGAACCAAACGTGCCAAGAAGCTCGGAAAAATGTTTCAAGTTATGCCTGTGTGTCACAGAACAGTGAATGTTTCAATGCAACGGAGGGACCTGGTTACCTCTGCAACTGCTCTCATGGTTTTCAAGGAAACCCTTACCTCCCTCATGGTTGCCAAGATATTAATGAATGCGCGGAATCAAACGAATGCATTGATGGGGCAAAATGCATCAACGTTCTTGGGGGCTACAATTGTTCTTGTCCGAAAGGATATGAAGGAGATGGCAAAACAACATGCCATCGCAAACCCAGGAGAGATATCATACTGATTATTGCTTTGAGTGTGAGTGTAATGGTCATAGCACTGCTCATTGGAAGCTTTTATGTGTATTGGGCATTGAAGAAGAGAAAGCTCATCAAACTTAAAGAACAATTTTTTCAACAAAATGGTGGCTTATTATTCCAACAACAGATAGCAAGGCATAGAGGGTCAACTGAAACAGCTAAAGTCTTCACTGAGGCGGAGTTAAAGGATGCCACCAACAACTTTGATGAAGGAAGAGTCCTAGGCCAAGGTGGCCACGGAACAGTTTACAGAGGAATATTACATGATAACAGAACTGTAGCAATAAAAAAGTCCAAAATCAGTGACCCAAGCCAGATTGAGCAATTCATCAATGAAGTGGTCCTTCTTTCACAAATCAACCATAGGAATGTGGTAAAGCTCTTGGGCTGTTGTCTAGAGACACAAGTTCCCTTGCTTGTTTATGAATTCATCCCCAATGGTACTATCCATGAGCATCTTCATGATCAAAGCAATTCTATAAAACTTACATGGAAAACAAGATTGAGAATAGCAACAGAAGCTGCAGGGGCCCTGGCATACTTGCATTCTTCTATTTCTACACCAATCATACACAGAGATGTGAAAACTACAAATATACTACTTGATCATAATCTCATTGCAAAGGTTTCTGATTTTGGAGCTTCAAGGATTGTTCCTCTTGATAAAAATCAGCTAACCACTTTGGTGCAGGGGACACTGGGTTATCTTGATCCAGAATACTTTCAGACAAGCAATTTAACAGAGAAGAGTGATGTCTATAGTTTTGGGGTTGTCTTAGCAGAGTTACTGACAGGAAAGAAGGCACTCTCATTTGAAAGGCCAGAGGAAGATAGAAACCTTGCAGTTTACTTCCTTTCTTCTCTGAAAGAGGGTATGTTACTTAACATTGTGGACAGCCATATAACAGATGATGCAAATGTTGAGCAACTAAGGGTAGTTTCCGATATTGCAAAAAGGTGTTTAAGGGTGAGGGGAGAGGAGAGACCCACCATGAAAGAAGTGGCAATGGAACTTGAGGGGCTAAGAGTTACGGAAAAGCACCGGTGGGAAAGTGTCAATTTGTCTTCAGAAGAGACTGAGAAGTTGCTCAAAGCAGCACCATCTGCTTTCAATGTGGAAGATAGTGCTGGTGGAAGTGGCGTTACTTATGGCTTTGATAGCATAAACCGGATTTCGATTTCATTGGGTGGTGGAAGATGA 2241 0.4261 MAKQLLQLLIVVIIFSATQTQTQSIPMQKPNCPNNCGSLTIPFPFGTTEECSLDSSFIITCNQTSSPPTPFLSESNTTVLNISLNGELQISYPVASDCYTEGGKRVNQTIQDLNLKHFHISSKRNKFTVVGCDTLALVLGVESDQGKNYTTGCISLCNRRDDIVANGSCSGTGCCETSIPEGLSGFAYISTSLNNHTDVLDFNPCGYAFLVEEGAYSFLSTDLVHFEKTTFPVVLDWAVGNQTCQEARKNVSSYACVSQNSECFNATEGPGYLCNCSHGFQGNPYLPHGCQDINECAESNECIDGAKCINVLGGYNCSCPKGYEGDGKTTCHRKPRRDIILIIALSVSVMVIALLIGSFYVYWALKKRKLIKLKEQFFQQNGGLLFQQQIARHRGSTETAKVFTEAELKDATNNFDEGRVLGQGGHGTVYRGILHDNRTVAIKKSKISDPSQIEQFINEVVLLSQINHRNVVKLLGCCLETQVPLLVYEFIPNGTIHEHLHDQSNSIKLTWKTRLRIATEAAGALAYLHSSISTPIIHRDVKTTNILLDHNLIAKVSDFGASRIVPLDKNQLTTLVQGTLGYLDPEYFQTSNLTEKSDVYSFGVVLAELLTGKKALSFERPEEDRNLAVYFLSSLKEGMLLNIVDSHITDDANVEQLRVVSDIAKRCLRVRGEERPTMKEVAMELEGLRVTEKHRWESVNLSSEETEKLLKAAPSAFNVEDSAGGSGVTYGFDSINRISISLGGGR 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3312g00016 746 ProSiteProfiles EGF-like domain profile. 292 332 IPR000742 -
Gabi3312g00016 746 Gene3D Transferase(Phosphotransferase) domain 1 491 710 - -
Gabi3312g00016 746 SMART egf_5 243 291 IPR000742 -
Gabi3312g00016 746 SMART egf_5 295 332 IPR000742 -
Gabi3312g00016 746 SMART egfca_6 292 332 IPR001881 GO:0005509
Gabi3312g00016 746 SMART serkin_6 415 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3312g00016 746 FunFam Wall-associated receptor kinase 2 491 708 - -
Gabi3312g00016 746 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 308 319 IPR000152 -
Gabi3312g00016 746 SUPERFAMILY Protein kinase-like (PK-like) 400 688 IPR011009 -
Gabi3312g00016 746 CDD STKc_IRAK 421 688 - -
Gabi3312g00016 746 ProSiteProfiles Protein kinase domain profile. 415 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3312g00016 746 ProSitePatterns Serine/Threonine protein kinases active-site signature. 536 548 IPR008271 GO:0004672|GO:0006468
Gabi3312g00016 746 Pfam Calcium-binding EGF domain 292 331 IPR001881 GO:0005509
Gabi3312g00016 746 ProSitePatterns Protein kinases ATP-binding region signature. 421 444 IPR017441 GO:0005524
Gabi3312g00016 746 Pfam Wall-associated receptor kinase galacturonan-binding 32 86 IPR025287 GO:0030247
Gabi3312g00016 746 ProSitePatterns EGF-like domain signature 2. 317 331 IPR000742 -
Gabi3312g00016 746 ProSitePatterns Calcium-binding EGF-like domain signature. 292 317 IPR018097 GO:0005509
Gabi3312g00016 746 Pfam Protein tyrosine and serine/threonine kinase 418 685 IPR001245 GO:0004672|GO:0006468
Gabi3312g00016 746 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 20 694 IPR045274 GO:0007166
Gabi3312g00016 746 FunFam Wall-associated receptor kinase 2 385 490 - -
Gabi3312g00016 746 Gene3D Phosphorylase Kinase; domain 1 387 490 - -
Gabi3312g00016 746 Gene3D Laminin 294 333 - -
Gabi3312g00016 746 Gene3D Laminin 241 293 - -
Gabi3312g00016 746 FunFam Fibrillin 2 291 331 - -
Gabi3312g00016 746 CDD EGF_CA 292 326 - -
Gabi3312g00016 746 SUPERFAMILY EGF/Laminin 291 328 - -
Gabi3312g00016 746 FunFam Wall-associated receptor kinase 2 242 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3312g00016 Gabi-Chr3312 250057 252841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3312g00016 8 740 Receptor kinase-like Gene Family AT1G21250 46.338 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gabi3312g00016 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3312g00016 - - gmx:100798027 1082.01