Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3312g00007 ATGCTGATAACGGGTCTGGCCGGAGAAGCCCTCCACGGGGGCTCCGGTTCCCGGACGGTGGTGGTGGGGGTGAAGCTGGATTCCCCCAGCAAAGAGTTACTCACGTGGGCTATGGTCAAAGTTGCTCAGCCTGGTGATATTGTCGTTGCTCTACATGTTCATGGGAACCACGAAATGGTGAACAATGATGGGAAAACGTCTCTGCTTTCTCTTGTCAAGGCATTTGACTCTGTTGTTGCTGTTTATGAAGGATTCTGCAATTTGAAACAGGTGGATCTCAAGCTCAAAATTTGCCGTGGTTCATCAGTGAAGAAAACGTTGGTTCGAGAAGCAAATGCTTATTCTGCGACTCATGTTGTGGTCGGAACTGCTCAAGGCTTCCATAAAATCTCTGTAGCTAAGTATTGTGCTAAAAAGTTATTTAAGAAATGCTGTGTTCTTGCTGTTAACAATGGGAAAGTTGTGTTCAAGCGTGACGCCTGGCCACCAAATGTTGCTGAACTACAAGGGACTGATCGTCGTCACAGAAATGGTTTGTTTGGTTCAATTCATTGGACACTCAGTAAGAGTACAATTCATTGGACGGATGCTGATGAGGGAACCCGCCAAAAAATTTCAGATCACAGTTTAGCTAAGGTTTTTCTGGATTCTACAGAAATTGTTAGAAAAGAGAGCTGCTTAATTTGTGGCCCAACCCAGGCATTACCCAACACTTCTTGCCACCAATCTGCAGAAGGGTCTTCTGATGATGTTGTTAGTGAGAATTCTTTGGCTATAGTGCCTGTTCAGACCCCTGATGCAGGACAACCTGAATTGAAACCGGGTTGGCCACTACTGCACCGGAGAATTTTATCAGACAGACTATCTCATGATAGATCATGGATGCACCATATATCTGTGGTTCAGTGGGCAATGAGGTTGCCTTGTAGAAATCTTTCACATGCTGCAGATCATGATAAAAAACCTAACATTTGTGATCAAGGTCAAGATCAACCTGTGACTCTAGATGGTGAAAGTGGTGCTCTTGTCGTAGTAGATGCTGAAATAGGGATAGCTTTTTCGCCTGAATGCAATTCCAGAAGTATTCCTAAAGAATTGGAGGGCATTCATGAGAGATACTCATCAACTTGCAGATTGTTTGAGTACCAAGAACTTGTATCAGCGACATCAAATTTCATGCCGGAAAACTTGATTGGGAAAGGAGGAAGTAGTCAGGTTTATAGAGGCTGTCTTCCTGATGGCAAGGAACTTGCTGTCAAGATCCTAAAGCCTTCTTATGATGTTTTGAAGGAGTTTCTTTTGGAAATAGAAATTATCACTACCTTGCATCACAAAAACATTATTTCCCTCCTCGGGTTCTGCTTTGAGAATGGAAAACTTCTTCTGGTCTATGATTTCTTATCAGGAGGAAGCCTTGAAGAGAACCTTCATGGGAATAAGAAAAATCCACTTGTGTTTGGTTGGACTGAGAGATATAAGGTAGCAACGGGTGTTGCTGAGGCTTTGGAGTATCTGCATTGTAAAGATGATCAACCTGTGATCCACCGGGATGTAAAATCATCAAATATATTATTATCCGAGGATTTTGAACCCCAGCTCTCTGATTTTGGACTGGCTAAATGGGCATCAACCTCGTCCTCACATATAACCTGCACAGATGTTGCTGGAACCTTTGGTTACTTGGCTCCTGAATACTTTATCTATGGCAAAGTAAATGATAAGATCGATGTCTATGCATTTGGTGTCGTGCTCCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAATGGTGATTATCCAAAAGGTCAAGAGAGTCTCGTTATGTGGGCAAGTCCAATTCTAAATAGTGGAAAGGTGTTACAATTGTTGGATCCTATTTTGGGTGATAACTATGATCATGAGGAGATGGAAAGGATAGTCTTAGCAGCCACTCTCTGTATCAGACGTGCTCCAAGAGCTAGGCCTCAAATGAGCCTTATTTCAAAGCTCCTTCAAGGTGATGCTGATGCAATAAAGTGGGCAAGGCTAGAAGTTAATGCTTTGGAAGCGCCAGAAATGCTTGATGATGAAGTGTTGTCTCCTAGTAATCTACAGTCACATCTTAATCTTGCACTGCTTGATGTGGAGGATGACTCACTCTCAATGTGCAGTGTTGAGCATAGTGTCTCCTTGGAGGACTACTTGAGAGGCAGGTGGAGCCGCTCATCAAGCTTTGACTGA 2217 0.433 MLITGLAGEALHGGSGSRTVVVGVKLDSPSKELLTWAMVKVAQPGDIVVALHVHGNHEMVNNDGKTSLLSLVKAFDSVVAVYEGFCNLKQVDLKLKICRGSSVKKTLVREANAYSATHVVVGTAQGFHKISVAKYCAKKLFKKCCVLAVNNGKVVFKRDAWPPNVAELQGTDRRHRNGLFGSIHWTLSKSTIHWTDADEGTRQKISDHSLAKVFLDSTEIVRKESCLICGPTQALPNTSCHQSAEGSSDDVVSENSLAIVPVQTPDAGQPELKPGWPLLHRRILSDRLSHDRSWMHHISVVQWAMRLPCRNLSHAADHDKKPNICDQGQDQPVTLDGESGALVVVDAEIGIAFSPECNSRSIPKELEGIHERYSSTCRLFEYQELVSATSNFMPENLIGKGGSSQVYRGCLPDGKELAVKILKPSYDVLKEFLLEIEIITTLHHKNIISLLGFCFENGKLLLVYDFLSGGSLEENLHGNKKNPLVFGWTERYKVATGVAEALEYLHCKDDQPVIHRDVKSSNILLSEDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFIYGKVNDKIDVYAFGVVLLELLSGRKPINGDYPKGQESLVMWASPILNSGKVLQLLDPILGDNYDHEEMERIVLAATLCIRRAPRARPQMSLISKLLQGDADAIKWARLEVNALEAPEMLDDEVLSPSNLQSHLNLALLDVEDDSLSMCSVEHSVSLEDYLRGRWSRSSSFD 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3312g00007 738 SMART serkin_6 392 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3312g00007 738 Pfam Universal stress protein family 18 140 IPR006016 -
Gabi3312g00007 738 ProSitePatterns Protein kinases ATP-binding region signature. 398 420 IPR017441 GO:0005524
Gabi3312g00007 738 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 361 466 - -
Gabi3312g00007 738 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 17 150 - -
Gabi3312g00007 738 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672|GO:0006468
Gabi3312g00007 738 CDD USP_Like 19 149 - -
Gabi3312g00007 738 Gene3D Phosphorylase Kinase; domain 1 358 466 - -
Gabi3312g00007 738 FunFam Putative receptor-like serine/threonine-protein kinase 467 679 - -
Gabi3312g00007 738 ProSiteProfiles Protein kinase domain profile. 392 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3312g00007 738 Gene3D HUPs 17 151 IPR014729 -
Gabi3312g00007 738 Gene3D Transferase(Phosphotransferase) domain 1 467 676 - -
Gabi3312g00007 738 CDD STKc_IRAK 398 665 - -
Gabi3312g00007 738 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 139 - -
Gabi3312g00007 738 Pfam Protein kinase domain 395 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3312g00007 738 PANTHER OS08G0249100 PROTEIN 200 674 IPR046958 -
Gabi3312g00007 738 SUPERFAMILY Protein kinase-like (PK-like) 372 662 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3312g00007 Gabi-Chr3312 38696 41910 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3312g00007 379 659 Trihelix Transcription Factor Family AT1G68690 46.503 6.94e-76 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gabi3312g00007 Pkinase 5.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3312g00007 - - pcin:129303222 1050.04