Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi3312g00006 | ATGACTCATGACATCAGTTCTTACTTGGAGACTTCTATCACAAACCTCAATGTTCTGAATGATTTCTGGTGTTGGTGCAACGATACTTTAGCTTTTAGCAATATCTGCCACTTCCTAAGGAGTGATAAGAAAATGCAGTTTTATCATCATCCGTTTGATTTGGACAGCCAGAAAGTGAGACTTGCGTTGGAAGAGAAAGGCATTGATTATACATCTTACCATGTCAATCCCATCACTGGCAAGAACTTGGATTCCTCATTCTTCAAGACCAATCCCAGTGGAAGACTTCCTATTTTCCAAAATGGCTCTCACATCATTTACGATACTATTGATATAATCCAGTACATAGAAAGAATTGCTGTGATATCCTCAGGTTCTGAGAGTATCAGCATCAGTAGCAGGGAAGTGATTGAATGGATGCAGAAGATACAAGAATGGGATCCTAAGTTTTTTACCCTTTTCCATATACCAGAGAAATACCTGATTTATGTTTCCAAGTTCATAAGGAGGGTGGTGATTGCCCGAATGTCTGAGTCTCCTGAGTTAGCAAGTGCTTACCATGAGAAGTTAAGAGAAGCCTATCAGACAGCAGAAAAATTGAAAGACTTAGATGTTTTGAGAAGGAGCAAGGAGCATTTGGTTAGACTTCTTGATGAAGCAGAGATGCAGCTGAGTAAAACACGTTATTTAGCAGGTCAAGAGTTCACCATGGCTGATGTGACGCTCATTCCAGTACTGGCTCGTTTAGTACTATTGGATTTGGAGAATGAGTACATAACTTGCAGACCAAACATTGCTGAGTATTGGGTTTGGGTTCAGCAGAGGCCTAGTTATAGAAAGGTGATTGGTAAGTATTTTGATGGTTGGAGAAAGCACAAAACATTATTAAAATCTTGGTACATTGTTCGTATTAGAAGTTTGCTGAAGAGGTACTAG | 936 | 0.3953 | MTHDISSYLETSITNLNVLNDFWCWCNDTLAFSNICHFLRSDKKMQFYHHPFDLDSQKVRLALEEKGIDYTSYHVNPITGKNLDSSFFKTNPSGRLPIFQNGSHIIYDTIDIIQYIERIAVISSGSESISISSREVIEWMQKIQEWDPKFFTLFHIPEKYLIYVSKFIRRVVIARMSESPELASAYHEKLREAYQTAEKLKDLDVLRRSKEHLVRLLDEAEMQLSKTRYLAGQEFTMADVTLIPVLARLVLLDLENEYITCRPNIAEYWVWVQQRPSYRKVIGKYFDGWRKHKTLLKSWYIVRIRSLLKRY | 311 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi3312g00006 | 311 | SUPERFAMILY | GST C-terminal domain-like | 199 | 285 | IPR036282 | - | |
| Gabi3312g00006 | 311 | CDD | GST_N_family | 45 | 117 | - | - | |
| Gabi3312g00006 | 311 | PANTHER | GLUTATHIONE S-TRANSFERASE TCHQD | 45 | 311 | IPR044617 | GO:0004364 | |
| Gabi3312g00006 | 311 | SUPERFAMILY | Thioredoxin-like | 41 | 118 | IPR036249 | - | |
| Gabi3312g00006 | 311 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 43 | 124 | IPR004045 | - | |
| Gabi3312g00006 | 311 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 136 | 295 | IPR010987 | - | |
| Gabi3312g00006 | 311 | Coils | Coil | 203 | 223 | - | - | |
| Gabi3312g00006 | 311 | Gene3D | - | 168 | 282 | - | - | |
| Gabi3312g00006 | 311 | Pfam | Glutathione S-transferase, C-terminal domain | 206 | 252 | - | - | |
| Gabi3312g00006 | 311 | SFLD | Glutathione Transferase (cytosolic) | 45 | 269 | IPR040079 | - | |
| Gabi3312g00006 | 311 | Pfam | Glutathione S-transferase, N-terminal domain | 56 | 118 | IPR004045 | - | |
| Gabi3312g00006 | 311 | CDD | GST_C_family | 191 | 269 | - | - | |
| Gabi3312g00006 | 311 | Gene3D | Glutaredoxin | 37 | 119 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi3312g00006 | Gabi-Chr3312 | 24373 | 26853 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi3312g00006 | 45 | 311 | Glutathione S-transferase Gene Family | AT1G77290 | 68.539 | 1.05e-139 | 394 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi3312g00006 | K22077 | - | gmx:100792543 | 456.062 |