Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3312g00002 ATGGGTTCGTGTGGGAAATCTGCTATTGTTGATGATCCCTCAGGTGGGTCTGTTATTGAGCAGCATCTGTGCTCAGAGTTTCCGGTACAGTCTGTTCCTGTGCAGCAATCCGGTATAGAAGAAGCTTGCAATGTGTTGGACTCTAATGTTGACCTCTCCAGTATGACTGAGGCAAGCTTTGTTGATGTTACCGAGGGTTCCAGAGATGCTTTGGCAAGTGAATGTGAAAATGCTGATATGTTCCTATTGGAGAAAACTGCTGAAGATGATTGTCAGAATTGTTTGGGGATTTGTGGTGGGAACATTGAAGTTTCCTGTCTACAAAGTGGTGGTTTGTGCTCAGGAGGGAAGTTTCATGATCAAGGCAGCTTGGATGTTCCATCGGAGACTGTACCCACAAATAAATTGGAGAAGCATTGTGCTCAACAGGGTGAGCAGAAGGATGACAAGAGCAACATATTACCCTCAGCAGGGGATGATTCAGCAGTTGTGGAAGGCAAAAACGACGATGCTGGTTTACTTGCTGATGCTTTCAATTGTGTGTTTGGTTTCAGGCATTCTGAAGTGTCTTTGGAATCAGATTCCATGACTGACTTGGTAGTTGATTGCAACCAGCAGAGTGAGCAGGAAGAAATTATGAGGAATGCAGATCCCTTGCCAAAGGTTGTGGAAAAATGTGATGCTTTAAGTGGGATGGAAATTGATGCTTGCAGGCAGATATCTCCTTCACCGGGTATGGAAGTGCCGTTGGGTGCATTATATACAGACACTGAAGTAGAGAGCACAAGTGGTGAGCTACATGATCAGAAAGATGGTGAGGATTGGAATAGCACTTGTGAAGAAAAGATTAAAGCTTTTGTTGATAAAGAAATCAGTATGAATTCATTTGTAAAAGTATTGTCCTCACCAGGTTGCCATAGGACCTTGGGGAGTTCACCTGTAGTTGATTCACCTTGTGAGCCTACCCTGTTGGATTCGGGGAGTGAAGTGAAGAATGGTATACTGCAAATAGAAGATAATATCTGTAGATTGAAGGACAGTTCCTCAGAGGAAACTACCAACTCTAACTTTAGCAAACCATTGTATCCAGAATCAGATCAGCCCACTTTTGTTTTAATCACCAATAGCTCTTTGACGGATATGTCTGATCTCCTTTGTAAGGATGATGATGTTCCCATCAACAATAATAGTGCAGTGGACAATCCTGGATGGATAGATAATGATGGAAAAAGAGCTGTTGAAATTGATTGTGTCACTGAAAGCTTACTGTTACCTTCTCAAAGGAATAGTCGAAGAACTAGATTTGGTAGTAAGACACAAACTAAAAAGACCTCAAGAAAATGCAAGAACAAAGACAGTGTGGCACATCCAGGTGTAGTTATGAAGATAAACTTTAGAAAGAAAAGAAGTTGTTTCTCCAAACCAGCTCGTTCTTCTGTCTGGGGATTGCTTGGGAACATTAAACAGTCTTTTGAGCAAGATAATGAGCTTGGGGTCAGTGAATCCATGTGCCAAGAAGTGGGGAAGACTAGAAACAAGCGTCAAAGTGGGAAAGCGATTAAGAATGGTGCAAGTTCTAGCTCATCAAGTTCAGCACAGAAGTGTTCTGTTTCAACTACTCGTTATCGTTTGAAGATCAAATTTGGGAAGGAAACTGATTTAAGGTGTTCAAATGTCTTGATTCCAGAGGCCTCTGATGGCTTGGCTTCTGCTTCCTGCTTGGGGTCTGGTTCAGGTTCTCAGAAAGTAGCCAGCAATGCTGAAGATAAATTTTCTGAAGTTGTGGCTTTGGGCAATTTAGAATCTTTCAAAAATGACTTGGACAAGGATGGTCTTGTTCTAAATGGTCAAATTGCAAATAGCCACTTAGAAAATACTGGACTAATGAAGAATCCAGATGGGGATGCAGAGGAACAGTGTCTTGCAGTTCCTACAGAGAGGGTGGTTGAGGCATTGATTGATCCAATCAATAATAAGAGTATGGATCCTGGAACTTCACCTGATTCGGAAGTTATCAATTCAATTCCGGAAGGCCAGGTTGGAGAAAGACATCAAGAAGATTTACATCATGCTGTTTTAGATTTGTCTAAAGGGTTCAGTTCTAATTTGGATGTTACCATCAGCAAGCGAGGGAAGAAGAAAGACAAGCTTATTTGTTCCAGTAATTGTATCACTGAAGACGGAGCACAAGGTCCACCAGGTAATAATAGAGCCAAGAATTCAAAGAATCGCAGATGTAAGAAGAATTGCAGTGATGCAGTTAGCTCTTTGGAATTGCCTACTTCCACTGAGATAAGCAAATCACTGAGCAGTGAAGAATTATCCATAGAATCATTGCCCCTTTCTGGAGAGATTGAACTTGGAGGCTCCACTAAGGCTTTGAAAGTTGAATGTCACATGGAAGTTAAGACAACTTGTAAACCATCGGTTGACCATGGAGAATCCCAGGTCTTTGAGAATTTGCTGTCTTCTGCAAGATCTTTGGGGCGTAAATTACCGAAAAGTCTTAAACCTAACTCTAAAAGTCTTAAACCTAGTAGAGTTAGCAAGGCTAAATCTAAAGCTTCCGACTCGTCGAACAGGAAAAAAACTACTTGTAGAAGCAAGGAGAAACCGAAAAAGCAATCTAATAAGAGTGAAGTCAAGGGAAAAGGTGTCTCTCTTAAAGTTACGAGTGAAGTGGAAGATCACCCAGTTCCAGCAAATTTTGTGGGAAATCTTGAGTTGGATGCTGTTGGAAAAATTAATGCTGGTGACAACAAAGTATCAGTCAATGTATCTAATTTGGACATGCTGCCTGCTGTTGGTTTGGGAGAGCAGCATTTATCACCACGTAATGCGTGGGTACGTTGTGATGATTGTCACAAGTGGCGGCGTATTCCAGCTGTGCTTGCAGATCAAATTGATGAAACTAACTGCACCTGGACATGTAAGGACAGCAGTGATAAATCCTTTGATGATTGTGCTATCTCTCAAGAAAAGTCAAATGCAGAGATTAATAAAGAGTTGGGATTATCGGATGCCTCTGGTGAAGAAGATGCGTATGAAGACTCCAAAGCCTATAAGGAATTGGAATATCAACTGCCATTGGTTTCCCAGGAGTCAACTTTTACCCATATTTTCACCAATGAGTTTCTGCATCGTAACCACAAAACTCAAACTATTGATGAGATTATGGTCTGCCATTGCAAGCCATCTCAACATGGCAAGTTGGGCTGTGGGGACGAGTGTCTAAACCGGATGCTTAACATTGAATGTGTGCAAGGAACCTGCCCATGTGGGGACCATTGTTCCAATCAGCAGTTCCAAAAACGCAATTATGCCAGCTTGAAGTGGTTTAAATGTGGGAAAAAGGGTTATGGACTGAAGACACTTGACAGTGTAGCTAAAGGGCAGTTTCTTATTGAATATGTTGGAGAGGTGCTTGACATGCATGCTTATGAGGCACGGCAGAGAGAGTATGCTTTGAAGGGTCATAGGCATTTCTATTTTATGACCTTGAATGGCAGTGAGGTGATAGATGCGAGTGCAAAAGGGAATTTGGGGCGTTTCATTAATCATAGTTGTGACCCTAATTGTCGGACAGAAAAGTGGATGGTGAATGGGGAAATCTGTATTGGACTGTTTGCACTGAGGGATATTAAGCAGGATGAAGAATTGACATTTGATTACAATTATGTAAGGGTTTTTGGTGCTGCTGCCAAAAAGTGTTATTGTGGTTCACCTCATTGTCGAGGATATATAGGTGGTGGTGATCCGCTCAATGCTGAACTGATAGTTCAAGGTGATTCAGATGAAGAATTTCCAGAACCTGTGATGCTTATTGAAGATGGTGAAATTGAAGACAGTGTACCTATACCCAAGTACTATGATAATGTTGATACACAGTCTGCTAGACATATATTAAAAGGCAGGGATGTATTGGCCAAATCTAAAACTGCTATAGATGCTGATGGTTCTACAGAAAAAGAGAGTTCTGTGAACCCTGCCTCTGCTGTTTCCCTGTTGCAGAGCTCAGTAGAAGTGGACTCAAAAGACAAGTTGCCATCTTCTATTCGAGCAGAAAGAATTTCTCAACAAATGGAAGATGTAACAAGCAAACCCGTGTCTGCTTTACAAGGAGGATATTCAATGGAGTCAGAGTTTGTAGACAAAACTTCCTCCGTTCAAAGATTAGATACTACTCCTCCCCTTACAACTGTCAGCAAAGTGTTATCCAATTCTACTGGTAGTAGTAATAGGGAATCTAAGTCTGAAACAGTTGAAGGCATGAATTATTTTTCACAATCACATCTGCTTGTGAAGACTCCCCAACAAAATGGTTCTGTCAAAAAGGGAAAGGTTCGTGCTAATCCTCCAAATGGCCTTAAACCTGAGGTGACAGCCAACCGAATGCAGTTGTCATCTATCAAACACAAAAAAGTAGTAGAAGGCTCTTCCAATGGACGGTTTGAAGCAGTTCAGGAGAAACTTAATGAGCTGCTGGATGGAGACGGGGGAATAAGCAAAAGAAAAGATGCCACCAAAGGCTACTTGAAACTTTTGCTTCTTACTGTGGCATCAGGTGATAGAATCAATGGTGAAGCAATTCAAAGCAATCGAGATCTTTCCATGATCCTTGATGCCCTTCTGAAAACAAAATCTAGAGCGGTGCTGAATGATATAATTAACAAAAATGGTTTACAGATGTTACATAACATAATGAAGCAGTACAGGCAGGACTTCAAAAAAATTCCAATACTACGAAAGCTTCTTAAGGTCTTAGAGTACCTAGCAACAAGCAAGATATTGACATCTGAACATATCAGTGGTGGTCCTCCTTGCCAGGGAATGGAAAGCTTTAGGGAGTCAATGTTGTCTCTGACTGAGCATGATGACAAACAGGTTCATCAAATTGCTCGAAACTTCCGAGACAGATGGATTCCCAGACCTGTCAGAAAACATGGCTATATGGACAGGGATGATAGTAGGGTGGAATATCACAGAAGTTTCAATAGTAACAGATTTTCAGCATCACATAATCATAGACATGATCAGGATTCAAGACCTACAGAAGCAATTGATAGTGGTCAGCAGTCAATGCTTGTCACAACTTCAGTAGATGCTGGAGCCCAGGAGGGCTGCTCTGCACCGTCTCTAGCTGGGGCTGAAATCAAAGGGGCAAAAAAACGGAAGCGCAAAAGCCGATGGGATCAACCAGCGGAGACAAATTCACATTCTGATGCAGTTATTAGCTCTATTAACGAAAGTCAGAACATTCATGAGGATGTTCCACCTGGCTTTTCGTTTCCAATAGGTTCATTAAATGCTTCACTAAACTCTGGTGATCTTGCTTTTCAAAATGCTACACATTCTGGATGTCCCTCTGATGTAGTTATTGGTCATCCAAAAGAGAAATTCAACTCTCGCTTGCCTGTCTCTTATGGAATACCATGGTCTGTTGCCCATCAATATGGAACACCTCATGCTGAAAGCACACACTGTTGGGTCACTGCACCTGGCATGCCTTTTAACCCATTTCCTCCACTACCCTCTTATCCACGTGATGACAAAGACTGTCAAATTTCTAATACTACTAATGCTATGACAATTGATCAGCCTGCTGAAGTTAAGCAGTGGGATACCAGTGGTCTGGTTAATTGTTGCTCAGATGATATGATTCTCGGCGCAACTGGTGCTAACTCTGAAGACATTAACCATCCATGCGAGGACAATAAACACATTACTAAACGGTTGAAGGAAGATTCAAGTGATTTGGGAAGGAGGTACTTTAGACAGCAGAAATGGAATAATTCAAAAATACACCGACCATGGTTCAGGAGGAATGGATGGCAAAGTAATGGGAACAACACCAGTGGTGGTGATGTGTGTAGTATGGATGTAGATGTACCAAAAGAGTCAAAAGTTATATGTTCTTCTGAGGATGCAATCTGTAGAGATGAGAAAGCATTCTTCTCCTTTTTATACACTGTACCTGGGGTATCATGCTGTTCTGAATACTGA 6003 0.416 MGSCGKSAIVDDPSGGSVIEQHLCSEFPVQSVPVQQSGIEEACNVLDSNVDLSSMTEASFVDVTEGSRDALASECENADMFLLEKTAEDDCQNCLGICGGNIEVSCLQSGGLCSGGKFHDQGSLDVPSETVPTNKLEKHCAQQGEQKDDKSNILPSAGDDSAVVEGKNDDAGLLADAFNCVFGFRHSEVSLESDSMTDLVVDCNQQSEQEEIMRNADPLPKVVEKCDALSGMEIDACRQISPSPGMEVPLGALYTDTEVESTSGELHDQKDGEDWNSTCEEKIKAFVDKEISMNSFVKVLSSPGCHRTLGSSPVVDSPCEPTLLDSGSEVKNGILQIEDNICRLKDSSSEETTNSNFSKPLYPESDQPTFVLITNSSLTDMSDLLCKDDDVPINNNSAVDNPGWIDNDGKRAVEIDCVTESLLLPSQRNSRRTRFGSKTQTKKTSRKCKNKDSVAHPGVVMKINFRKKRSCFSKPARSSVWGLLGNIKQSFEQDNELGVSESMCQEVGKTRNKRQSGKAIKNGASSSSSSSAQKCSVSTTRYRLKIKFGKETDLRCSNVLIPEASDGLASASCLGSGSGSQKVASNAEDKFSEVVALGNLESFKNDLDKDGLVLNGQIANSHLENTGLMKNPDGDAEEQCLAVPTERVVEALIDPINNKSMDPGTSPDSEVINSIPEGQVGERHQEDLHHAVLDLSKGFSSNLDVTISKRGKKKDKLICSSNCITEDGAQGPPGNNRAKNSKNRRCKKNCSDAVSSLELPTSTEISKSLSSEELSIESLPLSGEIELGGSTKALKVECHMEVKTTCKPSVDHGESQVFENLLSSARSLGRKLPKSLKPNSKSLKPSRVSKAKSKASDSSNRKKTTCRSKEKPKKQSNKSEVKGKGVSLKVTSEVEDHPVPANFVGNLELDAVGKINAGDNKVSVNVSNLDMLPAVGLGEQHLSPRNAWVRCDDCHKWRRIPAVLADQIDETNCTWTCKDSSDKSFDDCAISQEKSNAEINKELGLSDASGEEDAYEDSKAYKELEYQLPLVSQESTFTHIFTNEFLHRNHKTQTIDEIMVCHCKPSQHGKLGCGDECLNRMLNIECVQGTCPCGDHCSNQQFQKRNYASLKWFKCGKKGYGLKTLDSVAKGQFLIEYVGEVLDMHAYEARQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKQDEELTFDYNYVRVFGAAAKKCYCGSPHCRGYIGGGDPLNAELIVQGDSDEEFPEPVMLIEDGEIEDSVPIPKYYDNVDTQSARHILKGRDVLAKSKTAIDADGSTEKESSVNPASAVSLLQSSVEVDSKDKLPSSIRAERISQQMEDVTSKPVSALQGGYSMESEFVDKTSSVQRLDTTPPLTTVSKVLSNSTGSSNRESKSETVEGMNYFSQSHLLVKTPQQNGSVKKGKVRANPPNGLKPEVTANRMQLSSIKHKKVVEGSSNGRFEAVQEKLNELLDGDGGISKRKDATKGYLKLLLLTVASGDRINGEAIQSNRDLSMILDALLKTKSRAVLNDIINKNGLQMLHNIMKQYRQDFKKIPILRKLLKVLEYLATSKILTSEHISGGPPCQGMESFRESMLSLTEHDDKQVHQIARNFRDRWIPRPVRKHGYMDRDDSRVEYHRSFNSNRFSASHNHRHDQDSRPTEAIDSGQQSMLVTTSVDAGAQEGCSAPSLAGAEIKGAKKRKRKSRWDQPAETNSHSDAVISSINESQNIHEDVPPGFSFPIGSLNASLNSGDLAFQNATHSGCPSDVVIGHPKEKFNSRLPVSYGIPWSVAHQYGTPHAESTHCWVTAPGMPFNPFPPLPSYPRDDKDCQISNTTNAMTIDQPAEVKQWDTSGLVNCCSDDMILGATGANSEDINHPCEDNKHITKRLKEDSSDLGRRYFRQQKWNNSKIHRPWFRRNGWQSNGNNTSGGDVCSMDVDVPKESKVICSSEDAICRDEKAFFSFLYTVPGVSCCSEY 2000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3312g00002 2000 PANTHER SET DOMAIN PROTEINS 446 1736 - -
Gabi3312g00002 2000 ProSiteProfiles SET domain profile. 1108 1225 IPR001214 GO:0005515
Gabi3312g00002 2000 MobiDBLite consensus disorder prediction 1666 1688 - -
Gabi3312g00002 2000 CDD SET_SETD2 1107 1249 IPR044437 GO:0010452|GO:0046975
Gabi3312g00002 2000 MobiDBLite consensus disorder prediction 517 532 - -
Gabi3312g00002 2000 SUPERFAMILY SET domain 1036 1246 IPR046341 -
Gabi3312g00002 2000 Gene3D - 938 1001 - -
Gabi3312g00002 2000 FunFam Histone-lysine N-methyltransferase 940 1001 - -
Gabi3312g00002 2000 MobiDBLite consensus disorder prediction 1398 1421 - -
Gabi3312g00002 2000 MobiDBLite consensus disorder prediction 829 891 - -
Gabi3312g00002 2000 ProSiteProfiles AWS domain profile. 1056 1106 IPR006560 GO:0005634|GO:0042054
Gabi3312g00002 2000 ProSiteProfiles Post-SET domain profile. 1233 1249 IPR003616 -
Gabi3312g00002 2000 MobiDBLite consensus disorder prediction 507 532 - -
Gabi3312g00002 2000 Gene3D SET domain 1022 1249 IPR046341 -
Gabi3312g00002 2000 Pfam CW-type Zinc Finger 948 994 IPR011124 GO:0008270
Gabi3312g00002 2000 MobiDBLite consensus disorder prediction 1715 1742 - -
Gabi3312g00002 2000 Pfam SET domain 1119 1225 IPR001214 GO:0005515
Gabi3312g00002 2000 MobiDBLite consensus disorder prediction 142 164 - -
Gabi3312g00002 2000 SMART PostSET_3 1233 1249 IPR003616 -
Gabi3312g00002 2000 Pfam AWS domain 1071 1105 IPR006560 GO:0005634|GO:0042054
Gabi3312g00002 2000 MobiDBLite consensus disorder prediction 429 451 - -
Gabi3312g00002 2000 FunFam Histone-lysine N-methyltransferase 1007 1264 - -
Gabi3312g00002 2000 ProSiteProfiles Zinc finger CW-type profile. 942 996 IPR011124 GO:0008270
Gabi3312g00002 2000 SMART shorttest3 1056 1107 IPR006560 GO:0005634|GO:0042054
Gabi3312g00002 2000 MobiDBLite consensus disorder prediction 850 880 - -
Gabi3312g00002 2000 MobiDBLite consensus disorder prediction 1434 1457 - -
Gabi3312g00002 2000 SMART set_7 1108 1231 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3312g00002 Gabi-Chr3312 6395 22141 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3312g00002 1090 1249 Su(var)3-9 homologs AT1G73100 34.021 3.62e-19 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi3312g00002 SET 7.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3312g00002 - - gmx:100795379 2743.76