LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3311g00004	ATGTCTAGCTCTGTAGTGGCGCATTCCAGCTCTTGGGCTTTGGCACTCGTCAAGATCTCCCCTTATACCTTCTCCGCCATCGGCATCGCCGTCGCTATCGGCGTCTCCGTCCTCGGTGCTGCCTGGGGGATTTACATAACCGGTAGTAGCTTGATCGGTGCTGCAATCAAAGCTCCCCGAATTACTTCCAAGAATCTCATTAGTGTAATCTTCTGTGAAGCTGTTGCTATATATGGTGTAATTGTGGCTATTATTCTACAAACAAAATTAGAAAGTGTTCCACCATCAAGTATCTATGCACCAGAGTCTCTTAGAGCTGGATATGCTATCTTTGCTTCTGGAATTATCGTGGGCTTCGCAAATCTTGTTTGTGGGTGTGTATTTTTTTTACCTGCCTCCCCGTTGCAGGAAATTCTCCTGTCGAATGGAGGGAGACCTTTTCCTGCTATTACATATCCAATTTTTTTTTTTTTTTTTTCTTGCAGGTTGTGTGTAGGAATAATTGGAAGCAGCTGTGCATTGTCTGATGCTCAGAACTCCTCTCTCTTTGTGAAAATTCTTGTGATTGAGATCTTTGGTAGTGCACTTGGGCTATTTGGAGTTATTGTTGGTATTATTATGTCAGCTCAAGCAACATGGCCCTCAAAAGTTTAG	654	0.4343	MSSSVVAHSSSWALALVKISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPPSSIYAPESLRAGYAIFASGIIVGFANLVCGCVFFLPASPLQEILLSNGGRPFPAITYPIFFFFFSCRLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPSKV	217

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3311g00004	217	CDD	ATP-synt_Vo_c_ATP6F_rpt1	24	86	-	-
	Gabi3311g00004	217	Gene3D	-	149	213	IPR035921	-
	Gabi3311g00004	217	Gene3D	-	22	136	IPR035921	-
	Gabi3311g00004	217	PANTHER	V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT	159	211	-	-
	Gabi3311g00004	217	SUPERFAMILY	F1F0 ATP synthase subunit C	20	89	IPR035921	-
	Gabi3311g00004	217	CDD	ATP-synt_Vo_c_ATP6F_rpt2	106	207	-	-
	Gabi3311g00004	217	Pfam	ATP synthase subunit C	27	86	IPR002379	GO:0015078\|GO:0033177\|GO:1902600
	Gabi3311g00004	217	Pfam	ATP synthase subunit C	163	207	IPR002379	GO:0015078\|GO:0033177\|GO:1902600
	Gabi3311g00004	217	SUPERFAMILY	F1F0 ATP synthase subunit C	162	208	IPR035921	-
	Gabi3311g00004	217	PRINTS	Vacuolar ATP synthase 16kDa subunit signature	38	64	IPR000245	GO:0033179\|GO:0046961\|GO:1902600
	Gabi3311g00004	217	PRINTS	Vacuolar ATP synthase 16kDa subunit signature	65	88	IPR000245	GO:0033179\|GO:0046961\|GO:1902600

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3311g00004	Gabi-Chr3311	36860	43970	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3311g00004	6	216	Primary Pumps ATPases(2)	AT4G32530	76.364	2.36e-106	303

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3311g00004	K03661		-	gmx:100778175	294.664