Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi330g00015 ATGGCTACTGCGAGGAATGTGAAGGATGTTTCGCCTCACGAGTTCGTCAAGGCTTACTCTGCTCACCTCAAACGATCTGGCAAGATGGAGCTTCCTGAGTGGACAGATATTGTGAAGACTGCAAGATTTAAAGAATTGGCTCCCTATGATCCTGATTGGTATTATGTTAGAGCGGCTTCCATGGCAAGAAAGATCTATTTGAGAGGGGGTCTCGGTGTTGGTGCATTTCAGAGGATTTATGGTGGGAGCAAGAGGAATGGTAGTCGTCCTCCTCATTTCTGCAAGAGCAGTGGCGCCATTGCTCGTCACGTTCTTCAACAGTTGCAGAGCATGAACATCATTGAGACTGACGTCAAGGGTGGCAGGAGAATTACATCCAGTGGCCAGAGGGATCTTGACCAAGTGGCTGGACGGATTGTGGTTGCACCTAACTGCTGA 438 0.4886 MATARNVKDVSPHEFVKAYSAHLKRSGKMELPEWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSKRNGSRPPHFCKSSGAIARHVLQQLQSMNIIETDVKGGRRITSSGQRDLDQVAGRIVVAPNC 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi330g00015 145 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Gabi330g00015 145 Gene3D - 1 142 IPR036388 -
Gabi330g00015 145 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Gabi330g00015 145 PANTHER 40S RIBOSOMAL PROTEIN S19 2 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Gabi330g00015 145 FunFam 40S ribosomal protein S19 2 143 - -
Gabi330g00015 145 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Gabi330g00015 145 SUPERFAMILY "Winged helix" DNA-binding domain 6 141 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi330g00015 Gabi-Chr330 131285 133616 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi330g00015 1 143 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 83.916 3.43e-93 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi330g00015 K02966 - gmx:100499800 279.641