Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi330g00009 ATGCATCAGTATCGTTTGTCCTTCAACTTGAGGGCTGATGTTAAATCGATTGTTGATTATAATCTTTCTTGGAGTGAATTTGATTTTGTTGATTATGACACCATTGAGAAAGAATCATCTGACTCTCTTTATTTAGTGGACGTCATTGGTTTAATCTCAGGAATTGGGGGAGTTTGTGATCGTGTAGTTTCTGGTAGGAAAACGAAAATGGTTGTGCTAGAGCTTGACAACTTGAGGGATCACAAGCTGGAATGCACTTTGTGGGAGCATTATGTGGATGAGGTGCAATCTTTTTTGGTAAACAGCGACACTCCTCATAATGTCTTAATAGTTCAGCTGGGAAGGATCAAATGTTTTACGGGTAAGGTCGGTTTAACCAATACAAAATACACAACAAAGATTGTCATGGATTCAAAGGTGCCAGAGATTGTTGAGTTCAAAAAATGTCTTTCAACTAATGGTGTGGAAAGTAGTATAAGGTTGACTCAGTTGTCTACTCAGTCCTCATATTCTTTCGAAAATGATTTTCTTAAGGAGACTGAAAAGAAGTCTATCAGTGATGTTAAGCTTTGTGGTGAGTTTTTACGTGCGATGACTGTATTTAAGGTTACGACATGCATCACGTATGGGACTATAAAATCTATTGAGAGCAAATACAACTGTTGGTACAAGTCTTGCAACAAATGTCCATTTTCTGTTTGTGAGGATTTTGAAAAGTGGTACTGTAAGAATTGCCAAAAACATTGGGATGATTATTATCCAAGATTTAGTGTTCAGGTCAGAGTTGTGGATAACACTAATTCTGCATCATTTCTTCTGTTTGATCGATATTGTGTTACTTTGTTGGGAATATCTGCTGGTGAATTGCGCGAGCGACATTTTAAGAGGGAGGAAGCGAATTTCGATAATGCTCACGAAAATGAAATTGTATCGTCGGAACACGAAAAGACTGTGGATGTTGAGAGTCAAACCTGTGATAGTGCTGACGTTGGTGATGTTTCTCTGACTGTGTTGACACCGGTGATTAATTCTCATAATTCCATTGCTGAGGATTTTAATTTTTCAGCTGTTCGAACTGCGAAAAAAATAAAGCTTGAAAAAGAGTTACGTATTTTCTGA 1119 0.3753 MHQYRLSFNLRADVKSIVDYNLSWSEFDFVDYDTIEKESSDSLYLVDVIGLISGIGGVCDRVVSGRKTKMVVLELDNLRDHKLECTLWEHYVDEVQSFLVNSDTPHNVLIVQLGRIKCFTGKVGLTNTKYTTKIVMDSKVPEIVEFKKCLSTNGVESSIRLTQLSTQSSYSFENDFLKETEKKSISDVKLCGEFLRAMTVFKVTTCITYGTIKSIESKYNCWYKSCNKCPFSVCEDFEKWYCKNCQKHWDDYYPRFSVQVRVVDNTNSASFLLFDRYCVTLLGISAGELRERHFKREEANFDNAHENEIVSSEHEKTVDVESQTCDSADVGDVSLTVLTPVINSHNSIAEDFNFSAVRTAKKIKLEKELRIF 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi330g00009 372 SUPERFAMILY Nucleic acid-binding proteins 204 303 IPR012340 -
Gabi330g00009 372 Pfam Replication factor-A C terminal domain 208 307 IPR013955 -
Gabi330g00009 372 CDD RPA1_DBD_B_like 47 148 - -
Gabi330g00009 372 Gene3D - 24 161 IPR012340 -
Gabi330g00009 372 Gene3D - 174 343 IPR012340 -
Gabi330g00009 372 SUPERFAMILY Nucleic acid-binding proteins 27 154 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi330g00009 Gabi-Chr330 76827 78985 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi330g00009 2 341 Core DNA Replication Machinery Family AT5G08020 20.904 5.35e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi330g00009 - - soe:130461853 183.726