Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3309g00040 ATGGTCATGGATATGCTTGGCCCCAGTCTATGGGATGTATGGAATAACAACTCACACTTGATGTCTGTTGAAATGGTGGCGTGTATAGCAATTGAGGCTATCTCCATATTAGAGAAGATACATTCTCGAGGTTATGTGCATGGTGATGTAAAACCTGAGAATTTCTTGCTTGGCCCCCCCGGAACTCCTGATGAAAAAAAGCTGTTTCTGGTTGATCTTGGATTAGCAACCCATTGGCGTGATACTTCAACTGGCCTTCATGTTGAGTACGATCAACGTCCAGATGTATTTAGGGGAACAGTTCGATATGCTAGTGTGCATGCTCATCTTGGGAGAACAGGTAGCAGGAGAGATGATTTGGAATCTCTGGCTTACACGCTAATCTTCCTTCTTCGTGGCCGGCTACCTTGGCAAGGATATCAGGGAGAAAATAAAGGTTTTCTTGTCTGCAAGAAGAAGATGGCTACCCCCCCAGGAACTTTATGTTCCCTTTGTCCTCCACCTTTTCGGCAGTTTGCTGAGTACATAGTGAATTTGAAGTTTGATGAAGAACCAAATTATGCAAAATATATACCACTTTTCGATGGAATTGTTGGTCCAAATCCAGACATCAGACCAATAAACACAGATGGTGCTCAGAAGCTTATATATCAGGTTGGACATAAGAGAGGAAGATTGACCGTGGAAGAGGATGATGATAACCAACCAAAAAAGAAGGTCAGAATGGGAATGCCAGCAACACAATGGATTAGTGTGTACAATGCTCGCCGACCAATGAAACAAAGGTACCATTACAATGTTGCTGATGTCCGGCTATCCCAACACATTGAGAAGGGATATGAGGATGTACTACTTATCAGCAGTGTAGCTTGTTGTTCTAACCTTTGGGCACTTATTATGGATGCTGGCACTGGTTTCACTGCACAAGTTCATCAACTCTCATCCTACTTTCTTCCCAAGGAATGGATTATGGAACAGTGGGAAAATAATTATTACATTAGTGCCATAGCAGGAGCTAATAATGGGAGCTCGTTGGTTGTAATGTCCAAAGGGACCCAATATTTACAGCAATCCTATAAAGTGAGTGATTCATTTCCGTTCAAGTGGATCAACAAGAAATGGAGAGAAGGATTTTACGTCACTGCTATGGCCACTGCTGGAAATAGATGGGCAATTGTTATGTCCCGTGGTGCTGGATTTTCAGACCAGGTTGTGGAACTTGATTTCCTGTATCCTAGTGAAGGTATTCATCGAAGGTGGGACAATGGTTACCGGATCACTTCAACTGCTGCTACATGGGACCAAGCTGCTTTGGTTCTTAGTGTTCCAAGAAGAAAACCAGCTGATGAAACTCAAGAGACACTCCGTACATCTGACTTTCCTGGTACTCATGTCAAGGAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGCTATGGGAGAACAGTTTCATGA 1458 0.4287 MVMDMLGPSLWDVWNNNSHLMSVEMVACIAIEAISILEKIHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATHWRDTSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATPPGTLCSLCPPPFRQFAEYIVNLKFDEEPNYAKYIPLFDGIVGPNPDIRPINTDGAQKLIYQVGHKRGRLTVEEDDDNQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADVRLSQHIEKGYEDVLLISSVACCSNLWALIMDAGTGFTAQVHQLSSYFLPKEWIMEQWENNYYISAIAGANNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGNRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDNGYRITSTAATWDQAALVLSVPRRKPADETQETLRTSDFPGTHVKEKWAKNLYIASICYGRTVS 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3309g00040 485 PANTHER CASEIN KINASE-RELATED 1 449 - -
Gabi3309g00040 485 SUPERFAMILY Protein kinase-like (PK-like) 1 198 IPR011009 -
Gabi3309g00040 485 Pfam Protein kinase domain 2 152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3309g00040 485 Gene3D Transferase(Phosphotransferase) domain 1 1 240 - -
Gabi3309g00040 485 SMART serkin_6 1 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3309g00040 485 ProSiteProfiles Protein kinase domain profile. 1 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3309g00040 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 45 57 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3309g00040 Gabi-Chr3309 351059 357004 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3309g00040 21 195 MAP Kinase Kinase Kinase AT1G62400 23.034 2.83e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Gabi3309g00040 Pkinase 9e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3309g00040 - - rcu:8275677 938.332