Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3309g00038 ATGGATGACAACCACGACAGCGGTGGCCGGAGCGCCGACAAGGCTCCGGCAGCCGAAGACGAAGGAAGCACAGCTCCCATTCCCGAGAAGGTACAGGTAGGTGGTTCTCCGTTATACAGAGTACAGAGAAAACTTGGGAAGGGAGGGTTTGGACAAGTTTACGTTGGTCGGCGCATCGGAGCCGGTGCCGGAGCCGTAGAGATAGCTTTAAAGTTTGAGCATAGAAAGAGTAAGGGGTGTAATTCTGGACCTCCTCATGAGTGGCAGGTTTACAATTCATTAGGTGGTAGTCATGGTGTTCCACGAGTTCATTACAAGGGGCGGCAAGGTGATTACTATGTTATGGTCATGGATATGCTTGGCCCCAGTCTATGGGATGTATGGAATAACAACTCACACTTGATGTCTGTTGAAATGGTGGCGTGTATAGCAATTGAGGCTATCTCCATATTAGAGAAGATACATTCTCGAGGTTATGTGCATGGTGATGTAAAACCTGAGAATTTCTTGCTTGGCCCCCCCGGAACTCCTGATGAAAAAAAGCTGTTTCTGGTTGATCTTGGATTAGCAACCCATTGGCGTGATACTTCAACTGGCCTTCATGTTGAGTACGATCAACGTCCAGATGTATTTAGGGGAACAGTTCGATATGCTAGTGTGCATGCTCATCTTGGGAGAACAGGTAGCAGGAGAGATGATTTGGAATCTCTGGCTTACACGCTAATCTTCCTTCTTCGTGGCCGGCTACCTTGGCAAGGATATCAGGGAGAAAATAAAGGTTTTCTTGTCTGCAAGAAGAAGATGGCTACCCCCCCAGGAACTTTATGTTCCCTTTGTCCTCCACCTTTTCGGCAGTTTGCTGAGTACATAGTGAATTTGAAGTTTGATGAAGAACCAAATTATGCAAAATATATACCACTTTTCGATGGAATTGTTGGTCCAAATCCAGACATCAGACCAATAAACACAGATGGTGCTCAGAAGGTTGGACATAAGAGAGGAAGATTGACCGTGGAAGAGGATGATGATAACCAACCAAAAAAGAAGGTCAGAATGGGAATGCCAGCAACACAATGGATTAGTGTGTACAATGCTCGCCGACCAATGAAACAAAGGTACCATTACAATGTTGCTGATGTCCGGCTATCCCAACACATTGAGAAGGGATATGAGGATGTACTACTTATCAGCAGTGTAGCTTGTTGTTCTAACCTTTGGGCACTTATTATGGATGCTGGCACTGGTTTCACTGCACAAGTTCATCAACTCTCATCCTACTTTCTTCCCAAGGAATGGATTATGGAACAGTGGGAAAATAATTATTACATTAGTGCCATAGCAGGAGCTAATAATGGGAGCTCGTTGGTTGTAATGTCCAAAGGGACCCAATATTTACAGCAATCCTATAAAGTGAGTGATTCATTTCCGTTCAAGTGGATCAACAAGAAATGGAGAGAAGGATTTTACGTCACTGCTATGGCCACTGCTGGAAATAGATGGGCAATTGTTATGTCCCGTGGTGCTGGATTTTCAGACCAGGTTGTGGAACTTGATTTCCTGTATCCTAGTGAAGGTATTCATCGAAGGTGGGACAATGGTTACCGGATCACTTCAACTGCTGCTACATGGGACCAAGCTGCTTTGGTTCTTAGTGTTCCAAGAAGAAAACCAGCTGATGAAACTCAAGAGACACTCCGTACATCTGACTTTCCTGGTACTCATGTCAAGGAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGCTATGGGAGAACAGTTTCATGA 1788 0.4474 MDDNHDSGGRSADKAPAAEDEGSTAPIPEKVQVGGSPLYRVQRKLGKGGFGQVYVGRRIGAGAGAVEIALKFEHRKSKGCNSGPPHEWQVYNSLGGSHGVPRVHYKGRQGDYYVMVMDMLGPSLWDVWNNNSHLMSVEMVACIAIEAISILEKIHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATHWRDTSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATPPGTLCSLCPPPFRQFAEYIVNLKFDEEPNYAKYIPLFDGIVGPNPDIRPINTDGAQKVGHKRGRLTVEEDDDNQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADVRLSQHIEKGYEDVLLISSVACCSNLWALIMDAGTGFTAQVHQLSSYFLPKEWIMEQWENNYYISAIAGANNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGNRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDNGYRITSTAATWDQAALVLSVPRRKPADETQETLRTSDFPGTHVKEKWAKNLYIASICYGRTVS 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3309g00038 595 SMART serkin_6 39 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3309g00038 595 SUPERFAMILY Protein kinase-like (PK-like) 39 312 IPR011009 -
Gabi3309g00038 595 MobiDBLite consensus disorder prediction 1 33 - -
Gabi3309g00038 595 Gene3D Transferase(Phosphotransferase) domain 1 7 354 - -
Gabi3309g00038 595 ProSiteProfiles Protein kinase domain profile. 39 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3309g00038 595 MobiDBLite consensus disorder prediction 1 17 - -
Gabi3309g00038 595 CDD STKc_CK1 39 308 - -
Gabi3309g00038 595 Pfam Protein kinase domain 39 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3309g00038 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Gabi3309g00038 595 FunFam casein kinase 1-like protein HD16 12 351 - -
Gabi3309g00038 595 PANTHER CASEIN KINASE-RELATED 39 559 - -
Gabi3309g00038 595 ProSitePatterns Protein kinases ATP-binding region signature. 45 71 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3309g00038 Gabi-Chr3309 350444 357004 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3309g00038 38 194 EF-hand Containing Proteins AT2G17290 30.000 9.87e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Gabi3309g00038 Pkinase 4.5e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3309g00038 - - gmx:100778855 1121.3