LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3309g00036	ATGATGACAGTGAGTTCTGGCTGCGAAGATAGGATGAAGGTGGCAAATGATAACGGCAAATATGTGCGCTATACACCAGAACAAGTGGAAGCTCTTGAGAGAGTTTATCATGAATGTCCCAAACCCAGTTCCATGAAACGTCAACAAATAATCAGAGAGTTCCCCATTCTCTCTAATATCGAACCTCAGCAGATCAAGGTTTGGTTCCAGAACAGAAGATGCAGGGACAAGCAGAAAAATGAAGCTTCACGGCTTCATGGTGTAAACAGGAAGCTGATAGAAATGAATAAACTGCTGATGGAGGAAAATGAGAGGCTGCAAAAGCAAGTGTCACACCTCGTCTATGAGAACACCTTTTTCCGCCAACAAACCCAGAATAATACAACACTTGCTACCACAGACCCGAGTTGCGAGTCAGTGATAATTAGTGGTCAACATCATCTTCTGACACCTCAGCAACCAAGAGATGCAAGCCCAGCTGGACTTTTGTCCATTGCAGAGGAGACTGTAGCAGAGTTTATTTCAAAGGCCACTGGAACTGGAACTGCTGTGGAGTGGGTCCCAATGCCTGGAATGAAGCCTGGTCCTGATTCCATTGGAATTGTTGCTATTTCTCATGGTTGCACTGGAGTGGCAGTACGTGCTTGTGGCCTAGTGAGTCTAGAACCTAAAAGAGTTGCTGAAATTCTCAAAGATCGAACCTCGTGGTTTCGTGATTGCAGATCTGTGAATGTTCTAAATATGATCTCCACTGCAAATGGGGGAACAATTGAACTGCTTTACATGCAGTTGTATGCACCAACAACTTTGGTACCAGCTCGTGACTTTTGGTTGCTACGTTACACATCTCTTTTGGAGAATGGTAGTCTTGTGATATGTGAAAGGTCACTTAACAACACTCAGAATGGTCCTACTATGCCCCCAGTGCAGCATTTTGTTAGAGCAGATATGCTACCAAGCGGGTATCTAATTAGACCTTGTGAAGGAGGGGGATCCATTATTCATATTGTTGATCATATGGTTTTAGAGCCCTGGAGTGTACCTGAAGTTTTGCGCCCACTTTATCAATCACCAATGCTGCTTGCTCAAAAGACAACTATGGCGGCTTTACGTCATTTGAGGCAGATTTCTCAAGAAGTATCACAGCCAAGTGTCACAGGATGGGGAAGAATGCCTGCTGCTCTACGAGCACTTAGTCAGAGATTGAGCAAGGGCTTTAATGAAGCTGTCAATGGGTTTGCAGATGATGGCTGGTCCTTGTTAGAAAGCGATGACAATGATGATGTTAAGCTTCTTGTGAATTCATCTCCTGGCAAGATAATGGGAGGAAATCTAGGTTATAACAATGGTTGCCCTTCTGTGAGTAGTTCCATACTATGTGCCAAAGCATCCGTGTTCTTACAGGATGTCCCTCCAGCAATTCTTCTTAGATTCTTGCGGGAGCACCGGTCACAATGGGCAGATAGTAGTATTGATGCTTACTCAGCTACTGCCATTAAAACTGGTCCCTGCAGCTTGCCAGGGGCTAGAGCAGGAAGCTTTGGGGGTCAAGTTATTCTTCCACTGGCTCACACAATTGAGCATGAAGAGTTCATGGAGGTTATTAAACTTGAAAACATGGGGTACTGTCGAGATGACATGACTATAACTGGTGATATTTTCCTCTTGCAACTTTGTAGAGGAGTTGATGAGCATGCAGTTGGCACCTGTGCAGAACTCATTTTTGCTCCCATGGATGCATCTTTCTCGGATAATAATCCCATGTTACCTTCTGGTTTTCGCATCATATCTCTTGATTCTAGCATGGATGCTACTAGTCCAAACCATACACTTGATCTTGCTTCTGCTCTTGAAGTTGGAACCACAGGAAACAAAACATATGGTGACAATGCTGGTCATTCTGAGAGCACAAAATCTGTGATGACAATAGCATTCCAGTTTGCATTTGAAGCAAACCTTCAAGACAATGTAACAACCATGGCCCGGCAATATGTCCACAGCATTATTGCATCTGTGCAGAAGGTTGCATTAGTGATTTCCCCTTCGCATTTCGGTTCTAAGAATTGTTTTCTTTCGCCACCTAGCACTCCTGAGGCACAAATACTTGCTCGGTGGATCTGTAACAGCTATAGGTTCTATCTAGGGGTAGAGCTGCAGAAGTGTGAAGGCAGTCACTCCATTCTCAAATCCCTTTGGCATCATTCAGATGCAGTTATGTGCTGCTCTTTAAAGTGGATCCTCCAGGCATTGCCAGTTTTTACATTTGCAAATCAATCTGGACTTGATATGCTTGAGACAACGTTGGTTGAACTGCAAGACATCACTTTGGACAAAATTTTTGACGACCAAAGAAAGAAAACCCTGTGCTTTGAGTTACTTCAGATTATGCAACAGGGTTTTGTGTGGATTCAAGGGGGTATCTGCTTGTCCAGCATGGGGAGGCCAGTGTCCTACGAGAGAGCAGTGGCATGGAAAGTATTAAACGAAGAAGAAACGGCACATTGCATCTGTTTCATGTTCATCAGCTGGTCATTGATCTGA	2541	0.4408	MMTVSSGCEDRMKVANDNGKYVRYTPEQVEALERVYHECPKPSSMKRQQIIREFPILSNIEPQQIKVWFQNRRCRDKQKNEASRLHGVNRKLIEMNKLLMEENERLQKQVSHLVYENTFFRQQTQNNTTLATTDPSCESVIISGQHHLLTPQQPRDASPAGLLSIAEETVAEFISKATGTGTAVEWVPMPGMKPGPDSIGIVAISHGCTGVAVRACGLVSLEPKRVAEILKDRTSWFRDCRSVNVLNMISTANGGTIELLYMQLYAPTTLVPARDFWLLRYTSLLENGSLVICERSLNNTQNGPTMPPVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMVLEPWSVPEVLRPLYQSPMLLAQKTTMAALRHLRQISQEVSQPSVTGWGRMPAALRALSQRLSKGFNEAVNGFADDGWSLLESDDNDDVKLLVNSSPGKIMGGNLGYNNGCPSVSSSILCAKASVFLQDVPPAILLRFLREHRSQWADSSIDAYSATAIKTGPCSLPGARAGSFGGQVILPLAHTIEHEEFMEVIKLENMGYCRDDMTITGDIFLLQLCRGVDEHAVGTCAELIFAPMDASFSDNNPMLPSGFRIISLDSSMDATSPNHTLDLASALEVGTTGNKTYGDNAGHSESTKSVMTIAFQFAFEANLQDNVTTMARQYVHSIIASVQKVALVISPSHFGSKNCFLSPPSTPEAQILARWICNSYRFYLGVELQKCEGSHSILKSLWHHSDAVMCCSLKWILQALPVFTFANQSGLDMLETTLVELQDITLDKIFDDQRKKTLCFELLQIMQQGFVWIQGGICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFISWSLI	846

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3309g00036	846	Coils	Coil	89	109	-	-
	Gabi3309g00036	846	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14	16	845	IPR044830	GO:0003700
	Gabi3309g00036	846	SUPERFAMILY	Bet v1-like	164	378	-	-
	Gabi3309g00036	846	ProSiteProfiles	'Homeobox' domain profile.	15	79	IPR001356	GO:0003677
	Gabi3309g00036	846	Gene3D	-	202	380	IPR023393	-
	Gabi3309g00036	846	SMART	START_1	164	376	IPR002913	GO:0008289
	Gabi3309g00036	846	SUPERFAMILY	Homeodomain-like	16	82	IPR009057	-
	Gabi3309g00036	846	ProSiteProfiles	START domain profile.	186	385	IPR002913	GO:0008289
	Gabi3309g00036	846	Pfam	MEKHLA domain	702	844	IPR013978	-
	Gabi3309g00036	846	SMART	HOX_1	17	83	IPR001356	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3309g00036	Gabi-Chr3309	323073	330908	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3309g00036	17	846	Homeobox Transcription Factor Family	AT4G32880	73.678	0.0	1269

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Gabi3309g00036		START	6e-48	CL0209

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3309g00036	K09338		-	gmx:100815727	1412.13

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