Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3309g00036 ATGATGACAGTGAGTTCTGGCTGCGAAGATAGGATGAAGGTGGCAAATGATAACGGCAAATATGTGCGCTATACACCAGAACAAGTGGAAGCTCTTGAGAGAGTTTATCATGAATGTCCCAAACCCAGTTCCATGAAACGTCAACAAATAATCAGAGAGTTCCCCATTCTCTCTAATATCGAACCTCAGCAGATCAAGGTTTGGTTCCAGAACAGAAGATGCAGGGACAAGCAGAAAAATGAAGCTTCACGGCTTCATGGTGTAAACAGGAAGCTGATAGAAATGAATAAACTGCTGATGGAGGAAAATGAGAGGCTGCAAAAGCAAGTGTCACACCTCGTCTATGAGAACACCTTTTTCCGCCAACAAACCCAGAATAATACAACACTTGCTACCACAGACCCGAGTTGCGAGTCAGTGATAATTAGTGGTCAACATCATCTTCTGACACCTCAGCAACCAAGAGATGCAAGCCCAGCTGGACTTTTGTCCATTGCAGAGGAGACTGTAGCAGAGTTTATTTCAAAGGCCACTGGAACTGGAACTGCTGTGGAGTGGGTCCCAATGCCTGGAATGAAGCCTGGTCCTGATTCCATTGGAATTGTTGCTATTTCTCATGGTTGCACTGGAGTGGCAGTACGTGCTTGTGGCCTAGTGAGTCTAGAACCTAAAAGAGTTGCTGAAATTCTCAAAGATCGAACCTCGTGGTTTCGTGATTGCAGATCTGTGAATGTTCTAAATATGATCTCCACTGCAAATGGGGGAACAATTGAACTGCTTTACATGCAGTTGTATGCACCAACAACTTTGGTACCAGCTCGTGACTTTTGGTTGCTACGTTACACATCTCTTTTGGAGAATGGTAGTCTTGTGATATGTGAAAGGTCACTTAACAACACTCAGAATGGTCCTACTATGCCCCCAGTGCAGCATTTTGTTAGAGCAGATATGCTACCAAGCGGGTATCTAATTAGACCTTGTGAAGGAGGGGGATCCATTATTCATATTGTTGATCATATGGTTTTAGAGCCCTGGAGTGTACCTGAAGTTTTGCGCCCACTTTATCAATCACCAATGCTGCTTGCTCAAAAGACAACTATGGCGGCTTTACGTCATTTGAGGCAGATTTCTCAAGAAGTATCACAGCCAAGTGTCACAGGATGGGGAAGAATGCCTGCTGCTCTACGAGCACTTAGTCAGAGATTGAGCAAGGGCTTTAATGAAGCTGTCAATGGGTTTGCAGATGATGGCTGGTCCTTGTTAGAAAGCGATGACAATGATGATGTTAAGCTTCTTGTGAATTCATCTCCTGGCAAGATAATGGGAGGAAATCTAGGTTATAACAATGGTTGCCCTTCTGTGAGTAGTTCCATACTATGTGCCAAAGCATCCGTGTTCTTACAGGATGTCCCTCCAGCAATTCTTCTTAGATTCTTGCGGGAGCACCGGTCACAATGGGCAGATAGTAGTATTGATGCTTACTCAGCTACTGCCATTAAAACTGGTCCCTGCAGCTTGCCAGGGGCTAGAGCAGGAAGCTTTGGGGGTCAAGTTATTCTTCCACTGGCTCACACAATTGAGCATGAAGAGTTCATGGAGGTTATTAAACTTGAAAACATGGGGTACTGTCGAGATGACATGACTATAACTGGTGATATTTTCCTCTTGCAACTTTGTAGAGGAGTTGATGAGCATGCAGTTGGCACCTGTGCAGAACTCATTTTTGCTCCCATGGATGCATCTTTCTCGGATAATAATCCCATGTTACCTTCTGGTTTTCGCATCATATCTCTTGATTCTAGCATGGATGCTACTAGTCCAAACCATACACTTGATCTTGCTTCTGCTCTTGAAGTTGGAACCACAGGAAACAAAACATATGGTGACAATGCTGGTCATTCTGAGAGCACAAAATCTGTGATGACAATAGCATTCCAGTTTGCATTTGAAGCAAACCTTCAAGACAATGTAACAACCATGGCCCGGCAATATGTCCACAGCATTATTGCATCTGTGCAGAAGGTTGCATTAGTGATTTCCCCTTCGCATTTCGGTTCTAAGAATTGTTTTCTTTCGCCACCTAGCACTCCTGAGGCACAAATACTTGCTCGGTGGATCTGTAACAGCTATAGGTTCTATCTAGGGGTAGAGCTGCAGAAGTGTGAAGGCAGTCACTCCATTCTCAAATCCCTTTGGCATCATTCAGATGCAGTTATGTGCTGCTCTTTAAAGTGGATCCTCCAGGCATTGCCAGTTTTTACATTTGCAAATCAATCTGGACTTGATATGCTTGAGACAACGTTGGTTGAACTGCAAGACATCACTTTGGACAAAATTTTTGACGACCAAAGAAAGAAAACCCTGTGCTTTGAGTTACTTCAGATTATGCAACAGGGTTTTGTGTGGATTCAAGGGGGTATCTGCTTGTCCAGCATGGGGAGGCCAGTGTCCTACGAGAGAGCAGTGGCATGGAAAGTATTAAACGAAGAAGAAACGGCACATTGCATCTGTTTCATGTTCATCAGCTGGTCATTGATCTGA 2541 0.4408 MMTVSSGCEDRMKVANDNGKYVRYTPEQVEALERVYHECPKPSSMKRQQIIREFPILSNIEPQQIKVWFQNRRCRDKQKNEASRLHGVNRKLIEMNKLLMEENERLQKQVSHLVYENTFFRQQTQNNTTLATTDPSCESVIISGQHHLLTPQQPRDASPAGLLSIAEETVAEFISKATGTGTAVEWVPMPGMKPGPDSIGIVAISHGCTGVAVRACGLVSLEPKRVAEILKDRTSWFRDCRSVNVLNMISTANGGTIELLYMQLYAPTTLVPARDFWLLRYTSLLENGSLVICERSLNNTQNGPTMPPVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMVLEPWSVPEVLRPLYQSPMLLAQKTTMAALRHLRQISQEVSQPSVTGWGRMPAALRALSQRLSKGFNEAVNGFADDGWSLLESDDNDDVKLLVNSSPGKIMGGNLGYNNGCPSVSSSILCAKASVFLQDVPPAILLRFLREHRSQWADSSIDAYSATAIKTGPCSLPGARAGSFGGQVILPLAHTIEHEEFMEVIKLENMGYCRDDMTITGDIFLLQLCRGVDEHAVGTCAELIFAPMDASFSDNNPMLPSGFRIISLDSSMDATSPNHTLDLASALEVGTTGNKTYGDNAGHSESTKSVMTIAFQFAFEANLQDNVTTMARQYVHSIIASVQKVALVISPSHFGSKNCFLSPPSTPEAQILARWICNSYRFYLGVELQKCEGSHSILKSLWHHSDAVMCCSLKWILQALPVFTFANQSGLDMLETTLVELQDITLDKIFDDQRKKTLCFELLQIMQQGFVWIQGGICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFISWSLI 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3309g00036 846 Coils Coil 89 109 - -
Gabi3309g00036 846 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 16 845 IPR044830 GO:0003700
Gabi3309g00036 846 SUPERFAMILY Bet v1-like 164 378 - -
Gabi3309g00036 846 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677
Gabi3309g00036 846 Gene3D - 202 380 IPR023393 -
Gabi3309g00036 846 SMART START_1 164 376 IPR002913 GO:0008289
Gabi3309g00036 846 SUPERFAMILY Homeodomain-like 16 82 IPR009057 -
Gabi3309g00036 846 ProSiteProfiles START domain profile. 186 385 IPR002913 GO:0008289
Gabi3309g00036 846 Pfam MEKHLA domain 702 844 IPR013978 -
Gabi3309g00036 846 SMART HOX_1 17 83 IPR001356 GO:0003677
Gabi3309g00036 846 Pfam Homeodomain 20 78 IPR001356 GO:0003677
Gabi3309g00036 846 Pfam START domain 165 375 IPR002913 GO:0008289
Gabi3309g00036 846 CDD START_ArGLABRA2_like 159 376 - -
Gabi3309g00036 846 Gene3D - 13 85 - -
Gabi3309g00036 846 CDD homeodomain 20 80 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3309g00036 Gabi-Chr3309 323073 330908 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3309g00036 17 846 Homeobox Transcription Factor Family AT4G32880 73.678 0.0 1269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi3309g00036 START 6e-48 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3309g00036 K09338 - gmx:100815727 1412.13