Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3309g00035 ATGATGACAGTGAGTTCTGGCTGCGAAGATAGGATGAAGGTGGCAAATGATAACGGCAAATATGTGCGCTATACACCAGAACAAGTGGAAGCTCTTGAGAGAGTTTATCATGAATGTCCCAAACCCAGTTCCATGAAACGTCAACAAATAATCAGAGAGTTCCCCATTCTCTCTAATATCGAACCTCAGCAGATCAAGGTTTGGTTCCAGAACAGAAGATGCAGGGACAAGCAGAAAAATGAAGCTTCACGGCTTCATGGTGTAAACAGGAAGCTGATAGAAATGAATAAACTGCTGATGGAGGAAAATGAGAGGCTGCAAAAGCAAGTGTCACACCTCGTCTATGAGAACACCTTTTTCCGCCAACAAACCCAGAATAATACAACACTTGCTACCACAGACCCGAGTTGCGAGTCAGTGATAATTAGTGGTCAACATCATCTTCTGACACCTCAGCAACCAAGAGATGCAAGCCCAGCTGGACTTTTGTCCATTGCAGAGGAGACTGTAGCAGAGTTTATTTCAAAGGCCACTGGAACTGGAACTGCTGTGGAGTGGGTCCCAATGCCTGGAATGAAGCCTGGTCCTGATTCCATTGGAATTGTTGCTATTTCTCATGGTTGCACTGGAGTGGCAGTACGTGCTTGTGGCCTAGTGAGTCTAGAACCTAAAAGAGTTGCTGAAATTCTCAAAGATCGAACCTCGTGGTTTCGTGATTGCAGATCTGTGAATGTTCTAAATATGATCTCCACTGCAAATGGGGGAACAATTGAACTGCTTTACATGCAGTTGTATGCACCAACAACTTTGGTACCAGCTCGTGACTTTTGGTTGCTACGTTACACATCTCTTTTGGAGAATGGTAGTCTTGTGATATGTGAAAGGTCACTTAACAACACTCAGAATGGTCCTACTATGCCCCCAGTGCAGCATTTTGTTAGAGCAGATATGCTACCAAGCGGGTATCTAATTAGACCTTGTGAAGGAGGGGGATCCATTATTCATATTGTTGATCATATGGTTTTAGAGCCCTGGAGTGTACCTGAAGTTTTGCGCCCACTTTATCAATCACCAATGCTGCTTGCTCAAAAGACAACTATGGCGGCTTTACGTCATTTGAGGCAGATTTCTCAAGAAGTATCACAGCCAAGTGTCACAGGATGGGGAAGAATGCCTGCTGCTCTACGAGCACTTAGTCAGAGATTGAGCAAGGGCTTTAATGAAGCTGTCAATGGGTTTGCAGATGATGGCTGGTCCTTGTTAGAAAGCGATGACAATGATGATGTTAAGCTTCTTGTGAATTCATCTCCTGGCAAGATAATGGGAGGAAATCTAGGTTATAACAATGGTTGCCCTTCTGTGAGTAGTTCCATACTATGTGCCAAAGCATCCGTGTTCTTACAGGATGTCCCTCCAGCAATTCTTCTTAGATTCTTGCGGGAGCACCGGTCACAATGGGCAGATAGTAGTATTGATGCTTACTCAGCTACTGCCATTAAAACTGGTCCCTGCAGCTTGCCAGGGGCTAGAGCAGGAAGCTTTGGGGGTCAAGTTATTCTTCCACTGGCTCACACAATTGAGCATGAAGAGTTCATGGAGGTTATTAAACTTGAAAACATGGGGTACTGTCGAGATGACATGACTATAACTGGTGATATTTTCCTCTTGCAACTTTGTAGAGGAGTTGATGAGCATGCAGTTGGCACCTGTGCAGAACTCATTTTTGCTCCCATGGATGCATCTTTCTCGGATAATAATCCCATGTTACCTTCTGGTTTTCGCATCATATCTCTTGATTCTAGCATGGATGCTACTAGTCCAAACCATACACTTGATCTTGCTTCTGCTCTTGAAGTTGGAACCACAGGAAACAAAACATATGGTGACAATGCTGGTCATTCTGAGAGCACAAAATCTGTGATGACAATAGCATTCCAGTTTGCATTTGAAGCAAACCTTCAAGACAATGTAACAACCATGGCCCGGCAATATGTCCACAGCATTATTGCATCTGTGCAGAAGGTTGCATTAGTGATTTCCCCTTCGCATTTCGGTTCTAAGAATTGTTTTCTTTCGCCACCTAGCACTCCTGAGGCACAAATACTTGCTCGGTGGATCTGTAACAGCTATAGGTTCTATCTAGGGGTAGAGCTGCAGAAGTGTGAAGGCAGTCACTCCATTCTCAAATCCCTTTGGCATCATTCAGATGCAGTTATGTGCTGCTCTTTAAAGGCATTGCCAGTTTTTACATTTGCAAATCAATCTGGACTTGATATGCTTGAGACAACGTTGGTTGAACTGCAAGACATCACTTTGGACAAAATTTTTGACGACCAAAGAAAGAAAACCCTGTGCTTTGAGTTACTTCAGATTATGCAACAGGGTTTTGTGTGGATTCAAGGGGGTATCTGCTTGTCCAGCATGGGGAGGCCAGTGTCCTACGAGAGAGCAGTGGCATGGAAAGTATTAAACGAAGAAGAAACGGCACATTGCATCTGTTTCATGTTCATCAGCTGGTCATTGATCTGA 2529 0.4401 MMTVSSGCEDRMKVANDNGKYVRYTPEQVEALERVYHECPKPSSMKRQQIIREFPILSNIEPQQIKVWFQNRRCRDKQKNEASRLHGVNRKLIEMNKLLMEENERLQKQVSHLVYENTFFRQQTQNNTTLATTDPSCESVIISGQHHLLTPQQPRDASPAGLLSIAEETVAEFISKATGTGTAVEWVPMPGMKPGPDSIGIVAISHGCTGVAVRACGLVSLEPKRVAEILKDRTSWFRDCRSVNVLNMISTANGGTIELLYMQLYAPTTLVPARDFWLLRYTSLLENGSLVICERSLNNTQNGPTMPPVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMVLEPWSVPEVLRPLYQSPMLLAQKTTMAALRHLRQISQEVSQPSVTGWGRMPAALRALSQRLSKGFNEAVNGFADDGWSLLESDDNDDVKLLVNSSPGKIMGGNLGYNNGCPSVSSSILCAKASVFLQDVPPAILLRFLREHRSQWADSSIDAYSATAIKTGPCSLPGARAGSFGGQVILPLAHTIEHEEFMEVIKLENMGYCRDDMTITGDIFLLQLCRGVDEHAVGTCAELIFAPMDASFSDNNPMLPSGFRIISLDSSMDATSPNHTLDLASALEVGTTGNKTYGDNAGHSESTKSVMTIAFQFAFEANLQDNVTTMARQYVHSIIASVQKVALVISPSHFGSKNCFLSPPSTPEAQILARWICNSYRFYLGVELQKCEGSHSILKSLWHHSDAVMCCSLKALPVFTFANQSGLDMLETTLVELQDITLDKIFDDQRKKTLCFELLQIMQQGFVWIQGGICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFISWSLI 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3309g00035 842 Coils Coil 89 109 - -
Gabi3309g00035 842 Pfam MEKHLA domain 702 840 IPR013978 -
Gabi3309g00035 842 SUPERFAMILY Bet v1-like 164 378 - -
Gabi3309g00035 842 Gene3D - 13 85 - -
Gabi3309g00035 842 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677
Gabi3309g00035 842 SMART START_1 164 376 IPR002913 GO:0008289
Gabi3309g00035 842 SUPERFAMILY Homeodomain-like 16 82 IPR009057 -
Gabi3309g00035 842 ProSiteProfiles START domain profile. 186 385 IPR002913 GO:0008289
Gabi3309g00035 842 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 16 841 IPR044830 GO:0003700
Gabi3309g00035 842 SMART HOX_1 17 83 IPR001356 GO:0003677
Gabi3309g00035 842 Pfam Homeodomain 20 78 IPR001356 GO:0003677
Gabi3309g00035 842 Pfam START domain 165 375 IPR002913 GO:0008289
Gabi3309g00035 842 CDD START_ArGLABRA2_like 159 376 - -
Gabi3309g00035 842 CDD homeodomain 20 80 IPR001356 GO:0003677
Gabi3309g00035 842 Gene3D - 202 380 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3309g00035 Gabi-Chr3309 323073 330908 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3309g00035 17 842 Homeobox Transcription Factor Family AT4G32880 74.186 0.0 1274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi3309g00035 START 5.9e-48 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3309g00035 K09338 - gmx:100815727 1417.91