Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3309g00024 ATGTCGACTTCGGGCGAGGATCAACCCCGTCCGCGTCATATATCTCAATTCAAATTCGAGCTATTGCGCCCCCCTTCTCACTTTCATCACTCTCCTTTTCCTGATATTCCCTTGAGTCAAAGATATGAAGCCAACAATTTCAAGTCTCACACAAGTAATAACGAAGTTGCTCGTTCGAGCAAAACAGTTAGTCTTTCTCCTCCACTTCAAACCGAGCCTAGCATAAGAGGGAAGCATCATGGTAAACCAAAAGTTTCAAGAAATGCAAAACTTGGAACTCACAGATCAAATACCGAATCTCCTAACGTGACTGCAGTTAACAACTGTCGTTATGACAGTTCCTTAGGATTGTTAACCAAGAAATTTGTCAGCTTGATCAAGAATGCTAAGGATGGTACCCTGGATCTAAATAAAACCGCTGAGATCTTGGAGGTTCAAAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGAGTAGGATTGATAGAGAAAACTTCAAAGAATCATATACGGTGGAAGGGATGTGATGGAGTCGGGCCACGAGAACTAGATGATCAAGTTAATAATCTAAAGGCTGAAGTTGAAAGTCTATATGCTGAGGAATGCGAACTTGAGGATTGTATAAGGAAAAAGCAGGAGCTTCTAAGAAACCTGGGGGAAAGAGAAAACTCTCGGAAGTACCTTTTTTTGACCAAGGAAGAGATTCTTAGCCTTCCATGCTTCCAGAATCAGCAACTTATTGCAATCAAGGCTCCAAAAGCTAGTTTCATTGAGGTCCCTGATCCTGACGAGGAATTAGGTTTCCAGCAAAGGCAGTATAAAATGACTGTTAGAAGTGCCACTGGACCAATATCTTTGTACCTCTTGAGGTACCTCTCTTCTGTAACAATGCAGCCAAAACACGACCGCAAATTTGAGGATGATAGTGTCAAGCGGGTGAAATTCATAGATCCATCATGGAATAGTGACCACTGCAGAATGGGGGGTGTGGGATTATTAGGAAGCTCAGATGACCAGAAAAATCCTTCTGAGAGTTTAAGTTCGCTCAACTCAGAGATACATGATGACTATTGGTTTCATTCAGATCCTGAAGTGAGCCTAACAAAATTGTGGGAAAATGAGCAGTTGGTTCAGGTAGATGAGCTTCCAGACGATTAA 1161 0.416 MSTSGEDQPRPRHISQFKFELLRPPSHFHHSPFPDIPLSQRYEANNFKSHTSNNEVARSSKTVSLSPPLQTEPSIRGKHHGKPKVSRNAKLGTHRSNTESPNVTAVNNCRYDSSLGLLTKKFVSLIKNAKDGTLDLNKTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIRWKGCDGVGPRELDDQVNNLKAEVESLYAEECELEDCIRKKQELLRNLGERENSRKYLFLTKEEILSLPCFQNQQLIAIKAPKASFIEVPDPDEELGFQQRQYKMTVRSATGPISLYLLRYLSSVTMQPKHDRKFEDDSVKRVKFIDPSWNSDHCRMGGVGLLGSSDDQKNPSESLSSLNSEIHDDYWFHSDPEVSLTKLWENEQLVQVDELPDD 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3309g00024 386 CDD E2F_DD 186 290 IPR032198 GO:0046983
Gabi3309g00024 386 FunFam E2F transcription factor 1 104 177 - -
Gabi3309g00024 386 MobiDBLite consensus disorder prediction 49 104 - -
Gabi3309g00024 386 MobiDBLite consensus disorder prediction 90 104 - -
Gabi3309g00024 386 Pfam E2F transcription factor CC-MB domain 191 290 IPR032198 GO:0046983
Gabi3309g00024 386 Gene3D - 182 291 - -
Gabi3309g00024 386 Pfam E2F/DP family winged-helix DNA-binding domain 112 175 IPR003316 GO:0005667|GO:0006355
Gabi3309g00024 386 PANTHER TRANSCRIPTION FACTOR E2F 56 376 IPR015633 GO:0000978|GO:0006357
Gabi3309g00024 386 SUPERFAMILY E2F-DP heterodimerization region 186 290 IPR037241 -
Gabi3309g00024 386 Gene3D - 105 177 IPR036388 -
Gabi3309g00024 386 SUPERFAMILY "Winged helix" DNA-binding domain 110 173 IPR036390 -
Gabi3309g00024 386 MobiDBLite consensus disorder prediction 49 71 - -
Gabi3309g00024 386 SMART E2F_TDP_2 110 175 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3309g00024 Gabi-Chr3309 194280 199615 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3309g00024 90 374 E2F-DP Transcription Factor Family AT1G47870 52.721 2.97e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gabi3309g00024 E2F_CC-MB 1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3309g00024 K06620 - gmx:100811650 486.108