Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3309g00006 ATGACTCTTGAAGATTTTTTTACCTTGGCTGAGATGAAAGATGGGCTCACAGCCCCTTCTCGGGTGCAGGAGCTAGTGTCTGTAATGCAGAAGGAGAAAGATTGTGTGGTTAAAAATGCTAGTGATGCAACAAGGCAATGGGCTGCTGTTGCAGGCACTATTGCTGCTACAGAGAATAAAGATTGTCTTGATCTTTTTATTCAATTAGATGGACTTTGGTTCATTAATAGATGGTTAAATGACGCTCAAAATTTCGGGGTTGACCCAAACGACAGCTTTATTGAAGAATCAATCACTGCAATGTTACGGGCAGTTGAAAAGCTGCATCTAGACAGTGAGAAGTCAATTTCATCAGGAATTCACATCACCGTAAATAATCTTCTTGACCATCATAGCTCCAGGGTTCAGGATAGAGCAAGAGTACTATTTGATAGCTGGAAAGGAGGTGGAAACAGTGATGCTGAACCTCATGATGCGGAGCTTGCTAAAGTCAACAATGCAAGTGACAAGATTGTCAGGGAGGAAGGCCAGCCATCTGATTTGAATGGAACTGGCTATATTGATGATCATGCATCAGGACTTGTTGGAAGGGGGGAATCTCTTTCGAGAAACTCAGATAATTTACTGCCAGAGAGGTCTGCCGGCGTACTGATACAGAGTTCTGACAATGTGCTTCGGTCTTCCATAAGTGTGGAATGTGAAGATATCAACCAGAGATCACCAAACCATCTTGCTAGTGTATCATCTTCTGCTCAAGAAGTTGCTTCTGAACATGAAGGATTACCTACAGGTGAGACCACTTTGTTTGGAACCTGTAACTTTCCTGTTCCAAATCAAGGAAGTTTCGAAGGACAACCAGATGCGATGCAGTTAAGTGACACAGCCAAAAAGGAAAAGCAGGAGCAAAATGTTAATGGCCCTCCAGAAAAATTAGGACCACCAGAGATCTGTTCAGTGTCCACTAAGCTAGAACCTGAGCCTGTTTCCATGGGTGCTAGTGAAGCAAAAGTACCGGAATCCATGAAAGAACCAGCTTTAGAGTGCAATCTTGAAAACAATGAGGATGGTGTTGGTCATAAAATAATTGCTTCTGGTAGTATGAGGACACCTGCGTCTGATAGGAGCGGGTTGGATGATATCAGAACTGTTAACAATGATGACTGTTCTAATGCTATGCAGGATTCATCAGTCAGTGGCAGCAACTTGGGAAAGACTGAGGTGTTGGGGATGTCTGCGTCTGGAATAGAATATGTCAGAGCAGTAAAGGAAGACAAGGGACATGTTTATAATGATGGCAACGATACATCAAATGGTTCTGATTCTAGTAAACCTGGAAACTATTCTAGAAGTCCTAACATAATTGACAAGAAAGTTTCTGACAATGAACTTGATGATGGCATTGTGGATGCTTTAGAACTTGCTCGACAAGTTGCTCAGGAAGTTAAGAGAGATGTCTGTAGTTCTTCTTCAGAGAAAATCTCAGAAGGTGGAATCAGGCGACCAGGCAGCCCCGATTCTGTAAGAAAAGAGGATGAGCTCACTCGTGTCCCACCCAAGGAGGTCTTCTCCATACGAAGCCACTCTTCTCAGGAGGGACAAGCAAGTATTTCAAACAATATTGAGCCTGAGCTGGAATGCAGATCTGACCCAGAGTCCTTGCAAGTGACTGACGCAGCTCAAGATTCAGGAAGTAATTCAGAGAAACAACTCTGTGCCTTTGATCTCAATGAAGTTGGTTCTGATGATATGGATATTTCTGTAAACACAATGTCTACTCCAATACCTGTTGTCTCTGCTTCAAGGCCTACACCAACTCCTGGGTTGCCTGGGGCCCCTTTGCAGTTTGAGGGGACACTTGGGTGGAAAGGATCGGCCGCCACCAGTGCCTTTCGACGTGCATCTCCTCGTAAAAATTGTGATAGTGAAAAGATTCTTTCTGTTGATGGGAACTCCGATACTTCCAAGCAGAAGCAGGATTGGCTTGATATAGATCTAAATGTGGCTGAGGGTGAAGAAGGATTGGTAAAACCAATTGCTGAATTTTCAGGCCTTCCTTCTGGGCAATCATCTGTAGATCTCAGTCCTAAAAGATCAAACAGGCTTGAATTGGATTTGAACAGCATTGGTGATGATGGTGATGCCCAACCTTCAGATCACAGGATGGAGGGGCAACTCTTTCTTGGAAGAAATGGCTATTGGAGCCCATCACCTGCATCGTCATCATCATCAATGCAGCCTTCGGTTAGAAACATTGATTTGAATAACAGGCCATGCTTTCAAACTGATGTAGTTGACCAGGGGCCCGGTAAGTCTTCTCATACTATCAATGCATCTGGGCGTTCTAAATCATCTGATGCTCCTGTTATCTCTATTTTGGGTGCCAAGGTAGAAGTTGGTAAAAGAGAATATGTTACTCAAACTTTTTCCTTGCCAAATGGCAAGGCTATTGAACCTGCAATAGATCTTACAATGTCAAGACCAGGTGGCTTTTTAGGGATAGCCCCCACAGTATCCTACAATCATCCAGCTGTTTTTGGGTATAATGGATTGGCATCGGCATCAGCATCAGCACCCCCTTTTCCATCAGCCATGTACGGGTCAGGTGGCACAATTCCATACATGGTGGACACAAGAGGGGCTCCAGTTGTCCCTCAAGTAGGTGGATATTCATCAACTGTCCTTTCATCTTATTCTCAGCCACCCATCATAATGAGCATGACTGGTACACAACCCGGTTTAAATGGGTTTGGACCACCTTCACGTCCTAACTTAGACCTAAACTCTGGCTTCATGGTTGAGGGTGGGAATAGAGACGCATTGGCAGCTAGGCAATTTTTCTTTCCTGTTCAGGGGAGGGCTATGGAGGAGCATGTAAGAACCATGCAACAGCCCTCAAGTTCTGGGGTTGGTGGGAAAAGAAAGGAGCCAGATGGTGGTTGGGAATCCTACCCTTTTAGCTACAAACATCAGCAACCTCCATGGAATTAG 2988 0.4434 MTLEDFFTLAEMKDGLTAPSRVQELVSVMQKEKDCVVKNASDATRQWAAVAGTIAATENKDCLDLFIQLDGLWFINRWLNDAQNFGVDPNDSFIEESITAMLRAVEKLHLDSEKSISSGIHITVNNLLDHHSSRVQDRARVLFDSWKGGGNSDAEPHDAELAKVNNASDKIVREEGQPSDLNGTGYIDDHASGLVGRGESLSRNSDNLLPERSAGVLIQSSDNVLRSSISVECEDINQRSPNHLASVSSSAQEVASEHEGLPTGETTLFGTCNFPVPNQGSFEGQPDAMQLSDTAKKEKQEQNVNGPPEKLGPPEICSVSTKLEPEPVSMGASEAKVPESMKEPALECNLENNEDGVGHKIIASGSMRTPASDRSGLDDIRTVNNDDCSNAMQDSSVSGSNLGKTEVLGMSASGIEYVRAVKEDKGHVYNDGNDTSNGSDSSKPGNYSRSPNIIDKKVSDNELDDGIVDALELARQVAQEVKRDVCSSSSEKISEGGIRRPGSPDSVRKEDELTRVPPKEVFSIRSHSSQEGQASISNNIEPELECRSDPESLQVTDAAQDSGSNSEKQLCAFDLNEVGSDDMDISVNTMSTPIPVVSASRPTPTPGLPGAPLQFEGTLGWKGSAATSAFRRASPRKNCDSEKILSVDGNSDTSKQKQDWLDIDLNVAEGEEGLVKPIAEFSGLPSGQSSVDLSPKRSNRLELDLNSIGDDGDAQPSDHRMEGQLFLGRNGYWSPSPASSSSSMQPSVRNIDLNNRPCFQTDVVDQGPGKSSHTINASGRSKSSDAPVISILGAKVEVGKREYVTQTFSLPNGKAIEPAIDLTMSRPGGFLGIAPTVSYNHPAVFGYNGLASASASAPPFPSAMYGSGGTIPYMVDTRGAPVVPQVGGYSSTVLSSYSQPPIIMSMTGTQPGLNGFGPPSRPNLDLNSGFMVEGGNRDALAARQFFFPVQGRAMEEHVRTMQQPSSSGVGGKRKEPDGGWESYPFSYKHQQPPWN 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3309g00006 995 ProSiteProfiles TFIIS N-terminal domain profile. 73 153 IPR017923 -
Gabi3309g00006 995 MobiDBLite consensus disorder prediction 427 458 - -
Gabi3309g00006 995 MobiDBLite consensus disorder prediction 479 515 - -
Gabi3309g00006 995 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 152 IPR035441 -
Gabi3309g00006 995 MobiDBLite consensus disorder prediction 762 784 - -
Gabi3309g00006 995 MobiDBLite consensus disorder prediction 957 995 - -
Gabi3309g00006 995 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 995 - -
Gabi3309g00006 995 MobiDBLite consensus disorder prediction 431 454 - -
Gabi3309g00006 995 Pfam TFIIS helical bundle-like domain 101 147 IPR017923 -
Gabi3309g00006 995 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 149 IPR035441 -
Gabi3309g00006 995 MobiDBLite consensus disorder prediction 279 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3309g00006 Gabi-Chr3309 73489 79975 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gabi3309g00006 Med26 6.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3309g00006 - - ccaj:109815659 1394.79