Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3308g00003 ATGGAAAGAAAATTTTCACCTCTTGTTGTTGACAATGGAACTGGAATGGTCAAGGCTGGTTTTGCAGGTGATGATGCCCCAAGGGCTGTGTTTCCTAGTATTGTTGGGCGACCTCGTCACACGGGTGTTATGGTTGGGATGGGTCAGAAGGATGCTTATGTGGGTGATGAAGCCCAGTCAAAAAGGGGTATACTCACATTGAAGTATCCAATAGAGCATGGTATAGTTAGCAACTGGGATGACATGGAAAAGATTTGGCATCACACATTTTACAATGAGCTCCGTGTTGCCCCTGATGAACACCCAGTTCTTCTCACTGAGGCGCCACTCAATCCCAAGGCCAACAGAGAGAAGATGACCCAAATTATGTTTGAAACCTTCAATGTGCCTGCCATGTATGTTGCCATTCAGGCTGTTTTGTCTCTGTATGCCAGTGGACGCACAACAGGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTGCCCATATATGAAGGTTATTCTCTTCCTCATGCTATCCTTAGGTTGGACCTTGCTGGCCGAGATTTAACGGAGTACTTGATGAAAATTCTAACTGAGAGAGGATACTCTTTCACTACCACTGCTGAACGGGAAATTGTACGTGATGTGAAGGAGAAATTAGCTTATGTGGCCCTTGATTTTGAACAAGAAATGGAGACTGCTAAGAGTAGTTCTGCAGTGGAGAAAAGCTACGAATTACCTGATGGACAGGTCATTACAATAGGGTCTGAGAGATTCCGTTGCCCAGAAGTTCTCTTCCAGCCTTCTCTAATTGGTATGGAAGCTACTGGAATCCATGAAACTACGTACAACTCCATCATGAAATGTGATGTTGATATTAGGAAGGATCTATATGGAAATATTGTGCTTAGTGGTGGGTCAACTATGTTTCCTGGCATTGCTGATCGAATGAGTAAGGAAATCACTGCTCTTGCTCCGAGCAGCATGAAAATCAAGGTGGTGGCTCCTCCTGAGAGGAAATACAGTGTCTGGATTGGTGGGTCTATCTTAGCATCACTTAGCACCTTTCAACAGATGTGGATCTCCAAGGGTGAATTTGAAGAATCTGGTCCAGCTATTGTTCACCGGAAGTGCTTCTGA 1128 0.4468 MERKFSPLVVDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPDEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAILRLDLAGRDLTEYLMKILTERGYSFTTTAEREIVRDVKEKLAYVALDFEQEMETAKSSSAVEKSYELPDGQVITIGSERFRCPEVLFQPSLIGMEATGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEFEESGPAIVHRKCF 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3308g00003 375 Gene3D - 138 338 - -
Gabi3308g00003 375 Gene3D - 8 369 - -
Gabi3308g00003 375 SUPERFAMILY Actin-like ATPase domain 147 375 IPR043129 -
Gabi3308g00003 375 PRINTS Actin signature 140 159 IPR004000 -
Gabi3308g00003 375 PRINTS Actin signature 49 60 IPR004000 -
Gabi3308g00003 375 PRINTS Actin signature 26 35 IPR004000 -
Gabi3308g00003 375 PRINTS Actin signature 115 128 IPR004000 -
Gabi3308g00003 375 PRINTS Actin signature 236 252 IPR004000 -
Gabi3308g00003 375 PRINTS Actin signature 61 83 IPR004000 -
Gabi3308g00003 375 ProSitePatterns Actins and actin-related proteins signature. 104 116 IPR020902 -
Gabi3308g00003 375 FunFam Major actin 259 338 - -
Gabi3308g00003 375 CDD NBD_sugar-kinase_HSP70_actin 8 181 - -
Gabi3308g00003 375 SMART actin_3 5 375 IPR004000 -
Gabi3308g00003 375 FunFam Putative actin-related protein 5 339 367 - -
Gabi3308g00003 375 Pfam Actin 5 375 IPR004000 -
Gabi3308g00003 375 PANTHER ACTIN 7 368 IPR004000 -
Gabi3308g00003 375 FunFam Actin, muscle 180 271 - -
Gabi3308g00003 375 SUPERFAMILY Actin-like ATPase domain 5 153 IPR043129 -
Gabi3308g00003 375 FunFam Actin, alpha skeletal muscle 1 164 - -
Gabi3308g00003 375 ProSitePatterns Actins signature 1. 53 63 IPR004001 -
Gabi3308g00003 375 Gene3D Actin; Chain A, domain 4 180 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3308g00003 Gabi-Chr3308 42787 46802 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3308g00003 5 375 Cytoskeleton Gene Families AT3G12110 94.070 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3308g00003 K10355 - gmx:100778206 726.087