Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3308g00002 ATGGCGCCGAACACCCGACAGCTCCAACTAACTTCCACCGCCGCCTCCGCCGTCCACGGCGATCTCGAGGACGTCCGCCTCCTGGACTCCTACGAGAAGAACGACGTTGACGACGGAACGAAGCGAGTTCAGGTCAGAATCTCCGGCATGACCTGTGCCGCTTGCTCCAACTCCGTCGAGGCGGCTCTCAAGTCCGTCGACGGCGTCATCGGCGCCTCCGTCGCCCTGCTCCAGAACAAAGCCGACGTCGTTTTTAATCGGAGCCTCGTCAAGGATGAAGACATTAAGAATGCGATCGAAGATGCAGGTTTTGAAGCTGAGATTTTACCCGAACCCGGTTCGCTCGGAAACGGTACCACCTTGGTTGTGGGGCAGTTCACGATTGGGGGAATGACGTGTGCGGCGTGTGTGAATTCCGTTGAGGGCATTCTGAGGAACCTTTCAGGAGTGAAAAGGGCGGTGGTGGCTTTGGCTACTTCGTTAGGTGAAGTTGAGTATGATCCCAATGTGATTAGCAAAGATGATATTGTTAGTGCAATCGAAGATGCTGGTTTTGATGCTTCGTTTGTGCAGAGCAGTGGCCAGGATAAGATCGTTTTAGGTGTTGTTGGTGTGTGCGGTTTGGTTGATGCTCAGGTTTTGGAAGGCATGCTCAGCGGCATGAAAGGGGTGAGACAGTTTCGGTTTGACCCGTTATTGAGCGAACTGGATCTTGTGTTTGACCCTCAAGTTATCAGTTCTAGATCGTTGGTTGATGCGATCCAGCTTGGAGGCAATGGCGAGTTTAAAGTGCATGTTAGAAACCCTTATGCCAGAATGGCTTCTAAAGATGTTTCAGAGACCTCAACTATGTTTCGGCTTTTTATTTCCAGCCTTTTTCTTAGTATTCCTCTCTTTTTCATGGGGGTTGTTTGTCCTCATATACCATTGATATACTCCTTATTACTTTGGAGATGTGGGCCTTTTCTCATGGGTGATTGGCTGAAGTGGGCATTGGTGAGTCTCATCCAATTTGTGATTGGTAAGCGCTTCTACATAGCAGCTGGCAGAGCTCTTAGAAATGGTTCAACAAACATGGATGTCCTCGTTGCTTTGGGAACTACAGCCTCTTATGTTTATTCTGTTTGTGCTCTTCTTTATGGCGCTCTTACTGGATTTTGGTCTCCAATATACTTTGAAACAAGTGCTATGCTTATAACTTTTGTACTGTTGGGCAAGTATTTGGAATGCCTTGCTAAGGGAAAGACATCTGATGCCATTAAGAAGCTAGTAGAACTTGCTCCTGCAACAGCATTATTGGTTGTCAAAGATAAAGGTGGTAGATCTATTGAAGAAAGGGAAATCGATTCCTTGCTCATTCAACCTGGTGACACATTAAAAGTTCTTCCCGGTACAAAGATTCCTGCTGATGGTATTGTTTCTTGGGGTTCAAGTTATGTAAATGAGAGTATGGTGACCGGTGAATCTATACCTGTTTTGAAGGAGGTCAATGCATCTGTTATTGGAGGTACAATCAATCTGCATGGTGTCCTTCACATTCAAGCTACCAAAATAGGATCTGATACAGTTTTGAGTCAGATAATTAGTTTGGTGGAGACAGCCCAGATGTCAAAAGCTCCCATTCAAAAGTTTGCTGATTATGTGGCAAGCATATTTGTTCCTACAGTTGTGACTTTATCATTATTGACACTATTGTGTTGGTATATTGCTGGGGCTCTTGGAGCTTACCCCGAAGAATGGCTGCCAGAAAATGGAAATCACTTTGTTTTTGCTCTTATGTTTTCGATATCTGTTGTGGTGATTGCATGTCCCTGTGCACTTGGTTTGGCAACACCAACTGCTGTCATGGTGGCAACAGGCGTTGGGGCTAATAATGGTGTGTTAATTAAAGGAGGGGATGCCTTGGAGAGGGCTCAGATGGTGAAGTATGTTGTATTTGATAAAACAGGAACTCTAACTCAGGCAAGAGCCACCGTTACTACTGCCAAGGTGTTCACAGGAATGGACCGTGGAGAATTTCTTACATTGGTGGCTTCTGCTGAGGCTAGTAGTGAACACCCACTGGCAAAAGCAATATTACAATATGCCCGCCATTTTCATTTCTTTGATGAGTCCTCTCCTACCAGTGATGCCCAGAATGATGCTAAGAAGTTTATGTCAGGGTGGCTTTATGATGTCTCAGACTTCTCTGCTCTTCCGGGAAGAGGTGTTCAGTGCTTTATAGATGGAAAGCGTATTTTGGTTGGTAATAGGAAGCTGCTGGCAGAAAGTGGCATTAATATTTCTACCGAAGTGGAAAATTTTGTGGTAGAGCTGGAAGAAAGTGCGAAGACAGGGATACTGGTAGCATACGATGATGTATTAACTGGAGTCTTAGGGGTTTCAGACCCACTAAAGCGAGAAGCTTCTGTTGTTATTGAGGGCCTCCAGAAAATGGGAGTTGTACCTATTATGGTTACAGGAGATAACTGGAGAACAGCTCGAGCTGTTGCCAAGGAGGTTGGCATTCAAGACGTTAGAGCAGAGGTTATGCCTGCAGGAAAGGCTGAGGTTGTTCGTTCATTCCAAAAGGATGGAAGTATAGTTGCAATGGTGGGTGATGGTATCAATGACTCTCCTGCATTAGCTGCTGCAGATGTTGGCATGGCAATTGGGGCTGGGACAGATATTGCAATAGAAGCTGCTGACTATGTGCTGATGAGAGATAATTTGGAAGATGTGATCACAGCCATCGATCTTTCCCGGAGAACCTTTTCTCGTATTCGATTAAATTATGTATTTGCAATGGCCTACAATATTGTTGCTATACCCGTTGCTGCAGGAGTTTTATATCCTTCACTGGGGATCAAGCTTCCACCATGGGTTGCCGGTGCATGCATGGCTCTGTCTTCTGTGACTGTTGTATGCTCTTCTTTGCTTCTAAGAAGATATAGAAAACCCAGACTTACTACAATACTTGAAATAATTGTAAATTAA 2976 0.4523 MAPNTRQLQLTSTAASAVHGDLEDVRLLDSYEKNDVDDGTKRVQVRISGMTCAACSNSVEAALKSVDGVIGASVALLQNKADVVFNRSLVKDEDIKNAIEDAGFEAEILPEPGSLGNGTTLVVGQFTIGGMTCAACVNSVEGILRNLSGVKRAVVALATSLGEVEYDPNVISKDDIVSAIEDAGFDASFVQSSGQDKIVLGVVGVCGLVDAQVLEGMLSGMKGVRQFRFDPLLSELDLVFDPQVISSRSLVDAIQLGGNGEFKVHVRNPYARMASKDVSETSTMFRLFISSLFLSIPLFFMGVVCPHIPLIYSLLLWRCGPFLMGDWLKWALVSLIQFVIGKRFYIAAGRALRNGSTNMDVLVALGTTASYVYSVCALLYGALTGFWSPIYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLVVKDKGGRSIEEREIDSLLIQPGDTLKVLPGTKIPADGIVSWGSSYVNESMVTGESIPVLKEVNASVIGGTINLHGVLHIQATKIGSDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVTLSLLTLLCWYIAGALGAYPEEWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQMVKYVVFDKTGTLTQARATVTTAKVFTGMDRGEFLTLVASAEASSEHPLAKAILQYARHFHFFDESSPTSDAQNDAKKFMSGWLYDVSDFSALPGRGVQCFIDGKRILVGNRKLLAESGINISTEVENFVVELEESAKTGILVAYDDVLTGVLGVSDPLKREASVVIEGLQKMGVVPIMVTGDNWRTARAVAKEVGIQDVRAEVMPAGKAEVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRDNLEDVITAIDLSRRTFSRIRLNYVFAMAYNIVAIPVAAGVLYPSLGIKLPPWVAGACMALSSVTVVCSSLLLRRYRKPRLTTILEIIVN 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3308g00002 991 NCBIfam copper ion binding protein 125 187 IPR006122 GO:0005507
Gabi3308g00002 991 NCBIfam copper ion binding protein 43 106 IPR006122 GO:0005507
Gabi3308g00002 991 CDD P-type_ATPase_Cu-like 286 976 - -
Gabi3308g00002 991 PRINTS H+-transporting ATPase (proton pump) signature 837 853 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3308g00002 991 PRINTS H+-transporting ATPase (proton pump) signature 896 921 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3308g00002 991 PRINTS H+-transporting ATPase (proton pump) signature 865 881 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3308g00002 991 FunFam Copper-exporting P-type ATPase A 122 190 - -
Gabi3308g00002 991 Gene3D - 413 535 - -
Gabi3308g00002 991 NCBIfam heavy metal translocating P-type ATPase 359 974 IPR027256 GO:0006812|GO:0016020|GO:0019829
Gabi3308g00002 991 FunFam Probable copper-transporting ATPase HMA5 755 922 - -
Gabi3308g00002 991 SUPERFAMILY HMA, heavy metal-associated domain 125 192 IPR036163 GO:0046872
Gabi3308g00002 991 Gene3D - 657 796 IPR023299 GO:0000166
Gabi3308g00002 991 CDD HMA 44 107 IPR006121 GO:0046872
Gabi3308g00002 991 ProSitePatterns Heavy-metal-associated domain. 47 77 IPR017969 GO:0046872
Gabi3308g00002 991 Gene3D - 124 189 - -
Gabi3308g00002 991 SUPERFAMILY HAD-like 644 971 IPR036412 -
Gabi3308g00002 991 NCBIfam HAD-IC family P-type ATPase 398 666 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3308g00002 991 NCBIfam HAD-IC family P-type ATPase 741 946 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi3308g00002 991 ProSiteProfiles Heavy-metal-associated domain profile. 122 188 IPR006121 GO:0046872
Gabi3308g00002 991 PRINTS P-type cation-transporting ATPase superfamily signature 888 900 - -
Gabi3308g00002 991 PRINTS P-type cation-transporting ATPase superfamily signature 865 884 - -
Gabi3308g00002 991 PRINTS P-type cation-transporting ATPase superfamily signature 481 495 - -
Gabi3308g00002 991 PRINTS P-type cation-transporting ATPase superfamily signature 645 659 - -
Gabi3308g00002 991 PRINTS P-type cation-transporting ATPase superfamily signature 790 801 - -
Gabi3308g00002 991 PRINTS P-type cation-transporting ATPase superfamily signature 812 822 - -
Gabi3308g00002 991 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 21 986 - -
Gabi3308g00002 991 FunFam Copper-transporting ATPase 1, putative 413 535 - -
Gabi3308g00002 991 FunFam Copper-exporting P-type ATPase A 39 109 - -
Gabi3308g00002 991 SUPERFAMILY Calcium ATPase, transduction domain A 445 531 IPR008250 -
Gabi3308g00002 991 Gene3D - 612 922 IPR023214 -
Gabi3308g00002 991 Gene3D - 40 111 - -
Gabi3308g00002 991 CDD HMA 125 188 IPR006121 GO:0046872
Gabi3308g00002 991 Pfam haloacid dehalogenase-like hydrolase 641 879 - -
Gabi3308g00002 991 Pfam E1-E2 ATPase 428 624 - -
Gabi3308g00002 991 SFLD C1.7: P-type atpase like 627 917 - -
Gabi3308g00002 991 Pfam Heavy-metal-associated domain 45 105 IPR006121 GO:0046872
Gabi3308g00002 991 Pfam Heavy-metal-associated domain 126 186 IPR006121 GO:0046872
Gabi3308g00002 991 ProSitePatterns Heavy-metal-associated domain. 128 157 IPR017969 GO:0046872
Gabi3308g00002 991 FunFam Copper-exporting P-type ATPase 745 796 - -
Gabi3308g00002 991 SUPERFAMILY Calcium ATPase, transmembrane domain M 383 942 IPR023298 -
Gabi3308g00002 991 FunFam Copper-transporting ATPase RAN1 652 744 - -
Gabi3308g00002 991 SFLD p-type atpase 627 917 IPR044492 -
Gabi3308g00002 991 SUPERFAMILY HMA, heavy metal-associated domain 37 111 IPR036163 GO:0046872
Gabi3308g00002 991 ProSitePatterns E1-E2 ATPases phosphorylation site. 647 653 IPR018303 -
Gabi3308g00002 991 ProSiteProfiles Heavy-metal-associated domain profile. 41 107 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3308g00002 Gabi-Chr3308 16150 23354 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3308g00002 1 988 Primary Pumps ATPases AT5G44790 74.303 0.0 1496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3308g00002 K17686 - gmx:100798164 1686.39