Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3307g00053 ATGGAGGAAGCCATGGAGGATGAGAGCGCAGGGATATTGATCGAGTTGTTGAATGAGATAGCTAGCATCTCAGATTACAGGCCTGCGGTGAAGAAGCAGTACTGTAACTTGGCGAGGAGGTTGAAGCTGTTGACGCCGATGTTCGAGGAGATTAGTGACATGAAAGAGGCAATCTCTGAGGACACTTCAAAAGCTATGCTTGCCTTCAAGGAAGCTCTGGAATCCGCCAGGGAACTACTCAGATTCGGGAGTGAAGGCAGCAAGATTTACATGGTTCTTGAGAGGGACCAAATTATGAATAAATTCTATGAGGTGACAGCTCAGTTGGAACAATCATTGGGTGGAATTTCCTATGATAAACTTGACATATCAGATGAAGTTAAGGAGCAGGTTGAGCTGGTTCTTGCCCAGTTCAGAAGAGCCAAAGGGAGGGTTGATGAACCAGATGTCAAGTTGTATGAGGATATGTTGTGCCTTTACAACAAGAGCAGTGATGCAGCTACAGATCCAGTTGTTGTAAGTCGAGTAGCTGAAAAATTGCAATTGATGGGAATAGCAGAACTTACACAAGAATCACTCGCTTTGCATGAGATGGTTGCAGCAAGTGGTGGGGATCCAGGGGCACGCATCGAGAAGATGTCAATGTTATTGAAGAAGATAAAGGATTATGTGCAAACAGAAAATCTAGACAAGGATGATAATGTTGAACAAAAAGACCTTTCCTTAAGTGTCTACACGCTAGGAACAGATGAAAAGAATCATCAGGCCCTTGCTATCCCTGATGATTTTCGATGTCCGATTTCGCTAGAATTGATGAAGGATCCTGTCATTGTTTCAACAGGGCAGACTTATGAGCGTTCTTGCATTGAGAAGTGGTTGCAAGCAGGGCATGGGACATGCCCAAAAACACAGCAGACTCTCACTAGTACTGTTCTCACACCCAACTATGTCTTACGAAGCCTCATAGCACAATGGTGTGAAACCAATGGCATAGAGCCACCAAAACGACCCAGCAGCTCTCAACCTAGTAAATCAGCATCAGCCTGTTCCCCAGCTGAGCGAAGTAAGTTTGAAAATCTTCTCCAAAAGCTCATGTCTGGCAGTCCCGAAGACCAGAGATCAGCTGCAGGTGAGATCCGCCTTCTTGCAAAGCGCAATGCAGATAACCGTGTAGCTATCGCTGAAGCTGGCGCAATACCTCTTCTTGTTGGTCTCCTTTCTGTGCCTGACTCTCGCACTCAAGAGAATGCTGTGACAGCACTTCTGAATCTTTCCATATATGAAAATAACAAAGGAAGCATTGTTTCCTCAGGAGCAGTTCCAGGTATAGTTCATGTGCTGAAGAAGGGAAGCATGGAAGCTCGGGAAAATGCAGCAGCAACACTTTTCAGCCTTTCAGTTATAGATGAAAATAAGGTCACAATTGGCTCTTCAGGAGCCATACCACCGCTAGTGACACTGTTGAGTGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCTACAGCACTCTTCAATTTGTGCATTTACCAGGGTAACAAGGGAAAGGCAGTGAGAGCTGGTGTTATTCCAACACTGATGCGACTGCTGACAGAACCTAGTGGGGGAATGGTGGATGAAGCATTGGCCATTTTGGCAATATTGGCTAGCCATCCTGAAGGGAAAGCTGCCATTGGTGCTGCAGAGGCATTGCCGGTTTTGGTAGATTTTATTGGGAATGGATCCCCAAGGAACAAAGAGAACGCAGCTGCCGTTTTAGTGCATCTTTCTTCTGGAGATCAACAATATCTAGCACAGGCCCAAGATCTAGGGGTGATGGCTCCATTGTTGGAATTGGCTCAAAATGGTACAGACAGAGGCAAAAGAAAGGCAGCACAATTGCTAGAGCGTATGAACAGGCTCCTTGAGCAGCAGCAGGAGGAGGAAGTTCAAACACAAACTGAACTTCAAGCTCAGAACGAGGATACCCAACCACCTTTCATCACTGATTTAGATGATACCTAA 2001 0.4578 MEEAMEDESAGILIELLNEIASISDYRPAVKKQYCNLARRLKLLTPMFEEISDMKEAISEDTSKAMLAFKEALESARELLRFGSEGSKIYMVLERDQIMNKFYEVTAQLEQSLGGISYDKLDISDEVKEQVELVLAQFRRAKGRVDEPDVKLYEDMLCLYNKSSDAATDPVVVSRVAEKLQLMGIAELTQESLALHEMVAASGGDPGARIEKMSMLLKKIKDYVQTENLDKDDNVEQKDLSLSVYTLGTDEKNHQALAIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLQAGHGTCPKTQQTLTSTVLTPNYVLRSLIAQWCETNGIEPPKRPSSSQPSKSASACSPAERSKFENLLQKLMSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQENAVTALLNLSIYENNKGSIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPSGGMVDEALAILAILASHPEGKAAIGAAEALPVLVDFIGNGSPRNKENAAAVLVHLSSGDQQYLAQAQDLGVMAPLLELAQNGTDRGKRKAAQLLERMNRLLEQQQEEEVQTQTELQAQNEDTQPPFITDLDDT 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3307g00053 666 MobiDBLite consensus disorder prediction 637 666 - -
Gabi3307g00053 666 PANTHER U BOX DOMAIN-CONTAINING 31 632 - -
Gabi3307g00053 666 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Gabi3307g00053 666 FunFam RING-type E3 ubiquitin transferase 434 533 - -
Gabi3307g00053 666 Pfam U-box domain 259 329 IPR003613 GO:0004842|GO:0016567
Gabi3307g00053 666 SUPERFAMILY RING/U-box 249 335 - -
Gabi3307g00053 666 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 332 IPR013083 -
Gabi3307g00053 666 SUPERFAMILY ARM repeat 358 630 IPR016024 -
Gabi3307g00053 666 CDD RING-Ubox_PUB 260 312 IPR045210 -
Gabi3307g00053 666 Gene3D - 8 118 IPR036537 GO:0007166
Gabi3307g00053 666 MobiDBLite consensus disorder prediction 637 659 - -
Gabi3307g00053 666 FunFam RING-type E3 ubiquitin transferase 6 119 - -
Gabi3307g00053 666 Coils Coil 620 654 - -
Gabi3307g00053 666 FunFam RING-type E3 ubiquitin transferase 339 433 - -
Gabi3307g00053 666 FunFam RING-type E3 ubiquitin transferase 259 332 - -
Gabi3307g00053 666 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Gabi3307g00053 666 SMART arm_5 468 508 IPR000225 GO:0005515
Gabi3307g00053 666 SMART arm_5 509 549 IPR000225 GO:0005515
Gabi3307g00053 666 SMART arm_5 592 632 IPR000225 GO:0005515
Gabi3307g00053 666 SMART arm_5 550 590 IPR000225 GO:0005515
Gabi3307g00053 666 SMART arm_5 427 467 IPR000225 GO:0005515
Gabi3307g00053 666 SMART arm_5 386 426 IPR000225 GO:0005515
Gabi3307g00053 666 Gene3D - 495 655 IPR011989 -
Gabi3307g00053 666 Gene3D - 341 494 IPR011989 -
Gabi3307g00053 666 CDD MLKL_NTD 11 139 - -
Gabi3307g00053 666 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 397 439 IPR000225 GO:0005515
Gabi3307g00053 666 FunFam RING-type E3 ubiquitin transferase 534 651 - -
Gabi3307g00053 666 Pfam Armadillo/beta-catenin-like repeat 469 507 IPR000225 GO:0005515
Gabi3307g00053 666 Pfam Armadillo/beta-catenin-like repeat 386 425 IPR000225 GO:0005515
Gabi3307g00053 666 Pfam Neurochondrin 521 644 IPR008709 -
Gabi3307g00053 666 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 520 562 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3307g00053 Gabi-Chr3307 456700 460535 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3307g00053 5 666 U-box Gene Family AT3G46510 69.415 0.0 911
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3307g00053 - - gmx:100812160 1065.45