Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3307g00050 ATGGAGGAGAGTCATGAGAATGAGGAGGTGGGGATGGGAATGGGAGGGTCGAGTGGGATTCCAGCAAGTTCAAGATGGAACCCTACAAAAGAGCAAATAAGCATGTTAGAGAATCTCTATAAGCAGGGAATAAAGACACCAACTGCTGAGGAAATTCAGCAGATAACTACTAGGCTAAGAGCGTATGGTCACATCGAAGGAAAGAATGTCTTCTATTGGTTTCAGAATCACAAAGCCAGGCAAAGACAGAAGCAGAAGCAAGAAACCATCGCTTATTTCAATCGCTTTCTTCATAGGCCACAGTACCCCATTTTTTCTCCACCGATTTGCCCTGATGCACTCTGCGCCACATACTGCATACCTCAGGCACAGAGTGAAATCGGTTATTATCCCCAACATCCAAAGGTGCTTCTACCCATAGGTTATAGGAGGAGCCAAGCTGAGAAAGTTGTTGTGCCCACAACAATGTCGAGTGTCTGTAATGGCCCGATGGTATATGAAGGCATGCAACAAAGAATCTCGGATTCGAACTTCAGCTACAGTTATCAAGAAACGTTGGATCTCTTTCCTATGCATCCAACTGGCATTTTGGAAACAAGAAAAACAGACCAGGTGTCTTCTCTGGCTTCAGTTTCTGCTGATAGTTGTTCCAATGATACACCTTCTGGTTCTGATATCAATGAAGAAGATGGTGTTCCACGAAACCAACCCTTCTTTGATTTTTTTACTTCCGGACATGAAAGGTTCTCAAGAGAGTGA 759 0.4401 MEESHENEEVGMGMGGSSGIPASSRWNPTKEQISMLENLYKQGIKTPTAEEIQQITTRLRAYGHIEGKNVFYWFQNHKARQRQKQKQETIAYFNRFLHRPQYPIFSPPICPDALCATYCIPQAQSEIGYYPQHPKVLLPIGYRRSQAEKVVVPTTMSSVCNGPMVYEGMQQRISDSNFSYSYQETLDLFPMHPTGILETRKTDQVSSLASVSADSCSNDTPSGSDINEEDGVPRNQPFFDFFTSGHERFSRE 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3307g00050 252 MobiDBLite consensus disorder prediction 210 225 - -
Gabi3307g00050 252 MobiDBLite consensus disorder prediction 1 26 - -
Gabi3307g00050 252 MobiDBLite consensus disorder prediction 210 252 - -
Gabi3307g00050 252 ProSiteProfiles 'Homeobox' domain profile. 19 84 IPR001356 GO:0003677
Gabi3307g00050 252 SMART HOX_1 21 88 IPR001356 GO:0003677
Gabi3307g00050 252 CDD homeodomain 25 85 IPR001356 GO:0003677
Gabi3307g00050 252 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 6 218 IPR044555 GO:0003700|GO:0099402
Gabi3307g00050 252 SUPERFAMILY Homeodomain-like 24 90 IPR009057 -
Gabi3307g00050 252 Pfam Homeodomain 23 83 IPR001356 GO:0003677
Gabi3307g00050 252 Gene3D - 25 92 - -
Gabi3307g00050 252 FunFam WUSCHEL-related homeobox 4 23 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3307g00050 Gabi-Chr3307 402297 403545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3307g00050 17 245 Wox Gene Family AT5G59340 42.353 1.71e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gabi3307g00050 Homeodomain 1.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3307g00050 - - pvu:PHAVU_011G064900g 360.533