Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3307g00044 ATGAATATCTCTTCTGGAAGGGGAAGCTCAAGTAGTTCATGTGGGTCCAGAAGTGGAAGAAGGAGAGGTGCTCCATTGTGTAAATGTGGGAGGAACAGTGTTGTTTACACCTCCAAGACACTTAGAAACCCTAATAGATCATTTTTTGGGTGCCCTAACTTCAAGGAAAAGAAGCCACACTGTAACTTTTTTACATGGGTAGATGATGCTACATCTGATACCATGGAGTTGGAAGATTGGACAATTAACAAGCTGGAGTTGAATGTTGCTGAAATGGAGTTCAAGTTGAACTTTTTGGACATGAAGCTCAATGATGAACTGCAGCTAGAGGTGAATGACCACAAAAAGAAGATTCATGAGCACTGTATAAAGATTGAAGACATATCATTGAAGATAGGTAGTGACACCCGCAACACTTTTGTTGATCATCTTTATGCTCATCTCACCCGAAAAGGTATTTTTGCCTTTAAAGATGACGAAAAGCTCCAGAAAGGAGAATTCATTTCACCACAGCTTGTACAAGCAATTAAAAACTCACGGGTTTCTATTGTTGTCTTCTCAAAAGATTATGCTGCCTCATCATGGTGTTTGGATGAAATGACTACTATAGCTGAATGCCGTGAAGAATTGAAACAAACTGTTTTCCCAGTTTTCTATGATGTGGATCCATCTCATGTACGGAAAATGAATGGGGTGTATGAGAATGCCTTTATTTTACAAACAGAGAAATTCAAACAACATCCAGGCAAGGTTGATGGATGGAAGAGAGCTATGACGGATTTGGCCAAATCAGCTGGTTGGGATGTCAGGAATAAGCCGGAGTTTGGAGAGATTGAAAATATTGTTCAGGCAATGATAAAAATATTGGGTCATAGATTCTCAGGGTTTGCTGATGACCTTATTGGAATACAACCTCATGTAGCACAATTAGAAAGCATTTTAAAATTAAACTCAAAGGATGATGCTTTTCGAGTTTTAGGAATTTGGGGAATGGGTGGAATAGGAAAGACAACTCTTGCTACTGTTTTATATGACAGAATCTCTTATCAATTTGATGCTTGTTGTTTTATTCACGACATAAGCAAAATTTATAGAGATGGAGGTGCTATTGCTGTGCAGAAACAAATTCTTCGTCAATCTCTAGAAGAAAAAAATCTAGAGACATACAGTCCTTTTGAAATATCTGGGATTGTAAGATATAGGCTACACAACATAAAGATCCTTGCTGTTCTTGACAATGTTGATCAATCAGAACAATTGCAAGAATTAGCTATAAGTCCTAAATTTCTTTGCTCAGGAAGTAGAATAATCATAACCACTAGAGATGAGCATATTCTTAAAGTGTATGGAGCTGATAGAATTTATGAGGCTCACTTGATGAATGATGATGACGCTCACAAACTTTTATGCAGAAAAGCCTTCAAAAGTTATGATTCAAGCAGCAATTTTGTGGAGTTGATCCCTAAGATACTACAATATGCTCAAAGTCTTCCATTAGCAATTAGAGTTATGGGTTCCTTCTTATGTACCCGAAATGCCACCCAATGGAGAGCTACCTTGGATAGACTGCGGAATAATCCAGACCAAAAAATTGTGCAAGTGCTGAAGATAAGTTTTGAAGGGTTAGAGAAAAATGAGAAAGAAATATTTTTGCACATTGCTTGTTTCTTTAAAGGAGAGAGGGAGGATTATGTAAGGCGAGTTCTAGATTGTTGTGGATTAAACCCTGATATTGGAATTCCACTTATCACTGAAAAATCCCTCATAACCATTAGAAACCAGGAAATTCATATGCATGAATTGTTGCAAGAATTGGGGAAGCTAATTGTTCAGCAACAATTTCCCGAGAAACCAGGATCATGGAGTAGATTGTGGCTTCTTCAGGATTTCCATCATGTCTTGATGACAGAAACGGGAACGGACATGGTTGAAGCCATAATTCTAGATCAAAAAGAGGATGTCTCCAAATGTCCTCAGTTAAGGGCTGAAGGATTATCAATGATGACAAGTCTTAGACTGCTCATATTGTATCATAAGAGTTTTTCAGGAAAGCTAAACTTTCTTTCTAACAATCTACGGTATCTTTTGTGGCACAGTTATCCTTTTGCTTCTTTGCCAGCAAAATTAGAGCCGTATTATCTTGTTGAATTGAATATGCCTAATAGCAGCATACAACGGTTATGGGAAGGCTCCAAGGATCTTCCGAATTTGAAAAGGATGGATTTGAGCAACTCCAAATATCTTATGGAAACTCCAATGTTTAAAGGGATTCCAGAACTTGAGAGACTAGATCTTGCAGGATGCATAAACTTATGGCATGTCCATCCATCCATTGGACTTCTTACAAAACTTGTTTTCATGAGTTTGCGAAACTGTAGCAATCTGGTCTGTCTCGATTTCGGCACTTCATCTAATTTAATTTCTCCAAGGGTTCTACACCTCTCTGGTTGTACAAAACTTGAAAGCACGCCAGATTTTGCACAGGTTTCAAATCTTGAGTACCTTGATATTGATCAATGTACAAGTTTATACAAGATTCATAAATCTATTGGGGCTCTTGCAAAGCTTAGATTCTTGAGTTTGAGAGACTGCACAAGTCTTGTCAGTATACCCGATACCATTAACATGATGACGTCTCTTATAACTCTAGATTTATCCGGTTGCTTGAAACTTATGAAACTGCCCTTGGGACGAACTTTCAATTTTTCTTCTTCCACTCTGGAATCTTTGATTCATCTGGACTTGGGCTTTTGCAATCTACGGGAAATACCTGATGCTATTGGAGAGTTAAGGTGTTTGGAAAGACTGAATCTAGAAGGAAACAATTTTGTTTCAGAACCCCGTCACTTTCGTTGTGGCTTTGACATTGTTGTTCCTTGGGATGGGAAAATCAATGAAATGTTAATTCCAGATTGGTTCAATCATCGATTTAATGGGGGTAAAATAATAAGGATAGTAAACTCTGATGTGGATCGCAACTGGATTGGTTTTGCCTTTTATGTAGCTTTTGAGATTGATTTTTTGTGGAATTCTGTTCTCGTATTTTTATTCTTTAACATGCTAACAAGCTAA 3072 0.377 MNISSGRGSSSSSCGSRSGRRRGAPLCKCGRNSVVYTSKTLRNPNRSFFGCPNFKEKKPHCNFFTWVDDATSDTMELEDWTINKLELNVAEMEFKLNFLDMKLNDELQLEVNDHKKKIHEHCIKIEDISLKIGSDTRNTFVDHLYAHLTRKGIFAFKDDEKLQKGEFISPQLVQAIKNSRVSIVVFSKDYAASSWCLDEMTTIAECREELKQTVFPVFYDVDPSHVRKMNGVYENAFILQTEKFKQHPGKVDGWKRAMTDLAKSAGWDVRNKPEFGEIENIVQAMIKILGHRFSGFADDLIGIQPHVAQLESILKLNSKDDAFRVLGIWGMGGIGKTTLATVLYDRISYQFDACCFIHDISKIYRDGGAIAVQKQILRQSLEEKNLETYSPFEISGIVRYRLHNIKILAVLDNVDQSEQLQELAISPKFLCSGSRIIITTRDEHILKVYGADRIYEAHLMNDDDAHKLLCRKAFKSYDSSSNFVELIPKILQYAQSLPLAIRVMGSFLCTRNATQWRATLDRLRNNPDQKIVQVLKISFEGLEKNEKEIFLHIACFFKGEREDYVRRVLDCCGLNPDIGIPLITEKSLITIRNQEIHMHELLQELGKLIVQQQFPEKPGSWSRLWLLQDFHHVLMTETGTDMVEAIILDQKEDVSKCPQLRAEGLSMMTSLRLLILYHKSFSGKLNFLSNNLRYLLWHSYPFASLPAKLEPYYLVELNMPNSSIQRLWEGSKDLPNLKRMDLSNSKYLMETPMFKGIPELERLDLAGCINLWHVHPSIGLLTKLVFMSLRNCSNLVCLDFGTSSNLISPRVLHLSGCTKLESTPDFAQVSNLEYLDIDQCTSLYKIHKSIGALAKLRFLSLRDCTSLVSIPDTINMMTSLITLDLSGCLKLMKLPLGRTFNFSSSTLESLIHLDLGFCNLREIPDAIGELRCLERLNLEGNNFVSEPRHFRCGFDIVVPWDGKINEMLIPDWFNHRFNGGKIIRIVNSDVDRNWIGFAFYVAFEIDFLWNSVLVFLFFNMLTS 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3307g00044 1023 SUPERFAMILY Toll/Interleukin receptor TIR domain 134 267 IPR035897 -
Gabi3307g00044 1023 Pfam GRF zinc finger 25 69 IPR010666 GO:0008270
Gabi3307g00044 1023 Pfam NB-ARC domain 315 529 IPR002182 GO:0043531
Gabi3307g00044 1023 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 133 797 IPR044974 GO:0006952
Gabi3307g00044 1023 SMART till_3 124 264 IPR000157 GO:0007165
Gabi3307g00044 1023 MobiDBLite consensus disorder prediction 1 22 - -
Gabi3307g00044 1023 ProSiteProfiles TIR domain profile. 124 289 IPR000157 GO:0007165
Gabi3307g00044 1023 Pfam TIR domain 133 287 IPR000157 GO:0007165
Gabi3307g00044 1023 SUPERFAMILY "Winged helix" DNA-binding domain 530 634 IPR036390 -
Gabi3307g00044 1023 Gene3D - 460 543 IPR042197 -
Gabi3307g00044 1023 Gene3D - 129 294 IPR035897 -
Gabi3307g00044 1023 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 296 553 IPR027417 -
Gabi3307g00044 1023 Gene3D - 297 452 IPR027417 -
Gabi3307g00044 1023 SUPERFAMILY L domain-like 665 947 - -
Gabi3307g00044 1023 PRINTS Disease resistance protein signature 401 415 - -
Gabi3307g00044 1023 PRINTS Disease resistance protein signature 325 340 - -
Gabi3307g00044 1023 PRINTS Disease resistance protein signature 732 748 - -
Gabi3307g00044 1023 PRINTS Disease resistance protein signature 494 508 - -
Gabi3307g00044 1023 Gene3D Ribonuclease Inhibitor 636 805 IPR032675 -
Gabi3307g00044 1023 FunFam Disease resistance protein (TIR-NBS-LRR class) 128 291 - -
Gabi3307g00044 1023 Gene3D Ribonuclease Inhibitor 806 900 IPR032675 -
Gabi3307g00044 1023 Gene3D Ribonuclease Inhibitor 901 954 IPR032675 -
Gabi3307g00044 1023 Coils Coil 82 102 - -
Gabi3307g00044 1023 ProSiteProfiles Zinc finger GRF-type profile. 27 70 IPR010666 GO:0008270
Gabi3307g00044 1023 MobiDBLite consensus disorder prediction 1 18 - -
Gabi3307g00044 1023 Pfam Leucine Rich Repeat 713 732 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3307g00044 Gabi-Chr3307 304632 313412 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3307g00044 802 939 WRKY Transcription Factor Family AT4G12020 36.232 2.28e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3307g00044 - - vvo:131643801 1108.2