Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3307g00034 ATGTCTGCAGCACTCGATATGAGCCTCGACGACCTCATCAAGAGCAACAAAAAGTCTGGATCCGGAAACTTCAGAGGCCGCGCCCGACCCGGACCCGGACCCGCTCGCCGCTTCTCCAACCGTGCCGCCAACCGCGCCGCACCCTATGCCGCCCCGCCAGAGACTACGTGGCAGCACGATTTATATGCAGATCCGCATCTGGCTATGGCAGCTTACCCAGCTCAAGGTGGTCGTGCATCTTCCATAGAAACTGGAACCAAGCTTTACATATCTAACTTGGAGTATGGTGTTTCCAATGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGACCTGAAACGGCATACCGTTCATTATGACAGGAGTGGCAGATCAAAGGGTACGGCAGAAGTAGTCTTTTCGCGACGAGCTGATGCTATAGCTGCTGTAAAGAGATACAATAATGTTCAACTAGATGGCAAACCAATGAAGATAGAGATTGTGGGAACAAACATTTCCACACCTGCTGTGGCTCCTGCTGCAAATGGAGCTTTTGGGAATTCAAATGGAGTTCCTCGAAGCAGTGGACAAGTACGAGGCGGGGCAATAGGAAGGCTGGGAGGCAGAGGGCCAGGCATTCAAAGGGGTCGAGGACGTGGAAGAGGTCGAGGTGGTGGAAGAGGTCGAGGTGGAGGTCGTGGCGAGAAGTTATCTGCAGAAGATCTTGACACTGAATTGGAGAAATATCATGCAGAGGGAATGCAATTGAACTGA 753 0.5113 MSAALDMSLDDLIKSNKKSGSGNFRGRARPGPGPARRFSNRAANRAAPYAAPPETTWQHDLYADPHLAMAAYPAQGGRASSIETGTKLYISNLEYGVSNDDIKELFSEVGDLKRHTVHYDRSGRSKGTAEVVFSRRADAIAAVKRYNNVQLDGKPMKIEIVGTNISTPAVAPAANGAFGNSNGVPRSSGQVRGGAIGRLGGRGPGIQRGRGRGRGRGGGRGRGGGRGEKLSAEDLDTELEKYHAEGMQLN 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3307g00034 250 CDD RRM_THOC4 86 160 - -
Gabi3307g00034 250 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 248 - -
Gabi3307g00034 250 FunFam THO complex subunit 4 79 232 - -
Gabi3307g00034 250 SUPERFAMILY RNA-binding domain, RBD 32 160 IPR035979 GO:0003676
Gabi3307g00034 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 163 IPR000504 GO:0003723
Gabi3307g00034 250 SMART rrm1_1 87 159 IPR000504 GO:0003723
Gabi3307g00034 250 MobiDBLite consensus disorder prediction 14 39 - -
Gabi3307g00034 250 MobiDBLite consensus disorder prediction 221 237 - -
Gabi3307g00034 250 MobiDBLite consensus disorder prediction 194 237 - -
Gabi3307g00034 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 156 IPR000504 GO:0003723
Gabi3307g00034 250 Gene3D - 73 234 IPR012677 -
Gabi3307g00034 250 SMART FoP_duplication_2 174 250 IPR025715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3307g00034 Gabi-Chr3307 235450 242964 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3307g00034 85 160 Eukaryotic Initiation Factors Gene Family AT2G23350 34.211 2.11e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3307g00034 K12881 - gmx:100775827 332.413