Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3307g00033 ATGTCTGCAGCACTCGATATGAGCCTCGACGACCTCATCAAGAGCAACAAAAAGTCTGGATCCGGAAACTTCAGAGGCCGCGCCCGACCCGGACCCGGACCCGCTCGCCGCTTCTCCAACCGTGCCGCCAACCGCGCCGCACCCTATGCCGCCGCTAAGCCGCCAGAGACTACGTGGCAGCACGATTTATATGCAGATCCGCATCTGGCTATGGCAGCTTACCCAGCTCAAGGTGGTCGTGCATCTTCCATAGAAACTGGAACCAAGCTTTACATATCTAACTTGGAGTATGGTGTTTCCAATGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGACCTGAAACGGCATACCGTTCATTATGACAGGAGTGGCAGATCAAAGGGTACGGCAGAAGTAGTCTTTTCGCGACGAGCTGATGCTATAGCTGCTGTAAAGAGATACAATAATGTTCAACTAGATGGCAAACCAATGAAGATAGAGATTGTGGGAACAAACATTTCCACACCTGCTGTGGCTCCTGCTGCAAATGGAGCTTTTGGGAATTCAAATGGAGTTCCTCGAAGAGGGCCAGGCATTCAAAGGGGTCGAGGACGTGGAAGAGGTCGAGGTGGTGGAAGAGGTCGAGGTGGAGGTCGTGGCGAGAAGTTATCTGCAGAAGATCTTGACACTGAATTGGAGAAATATCATGCAGAGGGAATGCAATTGAACTGA 714 0.5042 MSAALDMSLDDLIKSNKKSGSGNFRGRARPGPGPARRFSNRAANRAAPYAAAKPPETTWQHDLYADPHLAMAAYPAQGGRASSIETGTKLYISNLEYGVSNDDIKELFSEVGDLKRHTVHYDRSGRSKGTAEVVFSRRADAIAAVKRYNNVQLDGKPMKIEIVGTNISTPAVAPAANGAFGNSNGVPRRGPGIQRGRGRGRGRGGGRGRGGGRGEKLSAEDLDTELEKYHAEGMQLN 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3307g00033 237 FunFam THO complex subunit 4 81 219 - -
Gabi3307g00033 237 MobiDBLite consensus disorder prediction 1 54 - -
Gabi3307g00033 237 SMART rrm1_1 89 161 IPR000504 GO:0003723
Gabi3307g00033 237 SMART FoP_duplication_2 170 237 IPR025715 -
Gabi3307g00033 237 Gene3D - 75 221 IPR012677 -
Gabi3307g00033 237 MobiDBLite consensus disorder prediction 178 237 - -
Gabi3307g00033 237 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Gabi3307g00033 237 CDD RRM_THOC4 88 162 - -
Gabi3307g00033 237 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 165 IPR000504 GO:0003723
Gabi3307g00033 237 Pfam C-terminal duplication domain of Friend of PRMT1 182 231 IPR025715 -
Gabi3307g00033 237 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 235 - -
Gabi3307g00033 237 SUPERFAMILY RNA-binding domain, RBD 36 162 IPR035979 GO:0003676
Gabi3307g00033 237 MobiDBLite consensus disorder prediction 208 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3307g00033 Gabi-Chr3307 235450 242964 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3307g00033 87 162 Eukaryotic Initiation Factors Gene Family AT2G23350 34.211 1.42e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3307g00033 K12881 - gmx:100775827 328.176