Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3307g00030 ATGTCTGCAGCACTCGATATGAGCCTCGACGACCTCATCAAGAGCAACAAAAAGTCTGGATCCGGAAACTTCAGAGGCCGCGCCCGACCCGGACCCGGACCCGCTCGCCGCTTCTCCAACCGTGCCGCCAACCGCGCCGCACCCTATGCCGCCGCTAAGCCGCCAGAGACTACGTGGCAGCACGATTTATATGCAGATCCGCATCTGGCTATGGCAGCTTACCCAGCTCAAGGTGGTCGTGCATCTTCCATAGAAACTGGAACCAAGCTTTACATATCTAACTTGGAGTATGGTGTTTCCAATGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGACCTGAAACGGCATACCGTTCATTATGACAGGAGTGGCAGATCAAAGGGTACGGCAGAAGTAGTCTTTTCGCGACGAGCTGATGCTATAGCTGCTGTAAAGAGATACAATAATGTTCAACTAGATGGCAAACCAATGAAGATAGAGATTGTGGGAACAAACATTTCCACACCTGCTGTGGCTCCTGCTGCAAATGGAGCTTTTGGGAATTCAAATGGAGTTCCTCGAAGTGGACAAGTACGAGGCGGGGCAATAGGAAGGCTGGGAGGCAGAGGGCCAGGCATTCAAAGGGGTCGAGGACGTGGAAGAGGTCGAGGTGGTGGAAGAGGTCGAGGTGGAGGTCGTGGCGAGAAGTTATCTGCAGAAGATCTTGACACTGAATTGGAGAAATATCATGCAGAGGGAATGCAATTGAACTGA 756 0.5106 MSAALDMSLDDLIKSNKKSGSGNFRGRARPGPGPARRFSNRAANRAAPYAAAKPPETTWQHDLYADPHLAMAAYPAQGGRASSIETGTKLYISNLEYGVSNDDIKELFSEVGDLKRHTVHYDRSGRSKGTAEVVFSRRADAIAAVKRYNNVQLDGKPMKIEIVGTNISTPAVAPAANGAFGNSNGVPRSGQVRGGAIGRLGGRGPGIQRGRGRGRGRGGGRGRGGGRGEKLSAEDLDTELEKYHAEGMQLN 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3307g00030 251 CDD RRM_THOC4 88 162 - -
Gabi3307g00030 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 165 IPR000504 GO:0003723
Gabi3307g00030 251 MobiDBLite consensus disorder prediction 14 54 - -
Gabi3307g00030 251 MobiDBLite consensus disorder prediction 222 236 - -
Gabi3307g00030 251 Gene3D - 75 235 IPR012677 -
Gabi3307g00030 251 SMART rrm1_1 89 161 IPR000504 GO:0003723
Gabi3307g00030 251 SMART FoP_duplication_2 176 251 IPR025715 -
Gabi3307g00030 251 SUPERFAMILY RNA-binding domain, RBD 73 192 IPR035979 GO:0003676
Gabi3307g00030 251 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 249 - -
Gabi3307g00030 251 MobiDBLite consensus disorder prediction 195 236 - -
Gabi3307g00030 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Gabi3307g00030 251 FunFam THO complex subunit 4 81 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3307g00030 Gabi-Chr3307 235450 242964 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3307g00030 87 162 Eukaryotic Initiation Factors Gene Family AT2G23350 34.211 2.10e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3307g00030 K12881 - gmx:100775827 327.791