Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3307g00022 ATGCGCATAGCTACTGCAATAGCGAATGGAAGTGCTTTTCTTCTTTTTCAGAGTTCTCCCTTACCGCGATTGCTATGCGCGCGCCATCATTCATCTACCAAATTGTTCGTCGCAGGGCTTTCCTACGATACGAATGAAACTGTTCTGAGAGATGCATTTGAGCAACACGGTGTTATCATTGAAGTTAAAGTAATATGTGATCATGTGACTGGGAAATCAAAAGGATACGGATTCGTGCGGTTCACTTCTGAAACCACAGCAGCCACAGCTCGCAAAGAAATGCACGGCCAGATACTGGATGGCAGACTCATTCGGATGGTGTTAGTGGCTCAAAGATTGTAA 342 0.4503 MRIATAIANGSAFLLFQSSPLPRLLCARHHSSTKLFVAGLSYDTNETVLRDAFEQHGVIIEVKVICDHVTGKSKGYGFVRFTSETTAATARKEMHGQILDGRLIRMVLVAQRL 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3307g00022 113 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 27 105 - -
Gabi3307g00022 113 SMART rrm1_1 34 107 IPR000504 GO:0003723
Gabi3307g00022 113 Gene3D - 17 112 IPR012677 -
Gabi3307g00022 113 SUPERFAMILY RNA-binding domain, RBD 29 106 IPR035979 GO:0003676
Gabi3307g00022 113 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 105 IPR000504 GO:0003723
Gabi3307g00022 113 FunFam Glycine-rich RNA-binding protein 2, mitochondrial 20 112 - -
Gabi3307g00022 113 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3307g00022 Gabi-Chr3307 199934 201972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3307g00022 33 112 Eukaryotic Initiation Factors Gene Family AT3G16380 41.250 1.64e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3307g00022 K13195 - gmx:100306540 159.073