Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3307g00012 ATGGTTCAACAGGAAATCCGAAGAGGTCCCTGGACAGAACAGGAGGACTTCAAATTGGTGTATTTTGTTGGCATGTTTGGAGACCGTAGATGGGAATTTATAGCTAAGGTTTCAGGTTTGAATAGAACAGGTAAGAGTTGCAGGTTACGGTGGGTTAATTACCTCCATCCTGATCTCAAACGAGGGAAGCTGACACCCCAAGAAGAACACCTTGTCATTGAGCTTCACTCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGCAAACTACCAGGGCGCACTGATAATGAGATTAAGAATTACTGGAGGACTCACTTGAGGAAGAAAAAGGCACAGGAGAAAAAACATGCACCAGTTCAATCACCAACATCTTCTAGTTGTCAATCCTCTTTAACCTCAAACAATCATGCTGTGGATTCACATGCTTCCAAAAAGGGTGGACAAGAAAGCTTTTATGACACAGACCAAGATGCTGAACAGGGTTACTCTATGGATGATATATGGAATGATATTGCTATGTCAGAAGAGAACATTAATATGCAACAAGTCTATGATGGGCAGAGTGAGGAGTGTTGCAAATTCTCTTGTCCTCCAATTCATTCTCCATCACTAGATTATTCTTCAGACCCGCTATGGGTGATGGATGAAGAAGAAAGAAAGATGTTATTCCCTATTATATGTGACCAATATTTTTCATGCTATCAACAAGGCACCGCAACTCTAACAGGTTAA 732 0.4126 MVQQEIRRGPWTEQEDFKLVYFVGMFGDRRWEFIAKVSGLNRTGKSCRLRWVNYLHPDLKRGKLTPQEEHLVIELHSKWGNRWSRIARKLPGRTDNEIKNYWRTHLRKKKAQEKKHAPVQSPTSSSCQSSLTSNNHAVDSHASKKGGQESFYDTDQDAEQGYSMDDIWNDIAMSEENINMQQVYDGQSEECCKFSCPPIHSPSLDYSSDPLWVMDEEERKMLFPIICDQYFSCYQQGTATLTG 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3307g00012 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Gabi3307g00012 243 MobiDBLite consensus disorder prediction 108 153 - -
Gabi3307g00012 243 FunFam Myb transcription factor 8 60 - -
Gabi3307g00012 243 CDD SANT 65 106 IPR001005 -
Gabi3307g00012 243 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Gabi3307g00012 243 SUPERFAMILY Homeodomain-like 5 102 IPR009057 -
Gabi3307g00012 243 SMART sant 60 108 IPR001005 -
Gabi3307g00012 243 SMART sant 7 57 IPR001005 -
Gabi3307g00012 243 Gene3D - 8 60 - -
Gabi3307g00012 243 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Gabi3307g00012 243 Gene3D - 63 137 - -
Gabi3307g00012 243 CDD SANT 10 55 IPR001005 -
Gabi3307g00012 243 MobiDBLite consensus disorder prediction 117 141 - -
Gabi3307g00012 243 FunFam MYB transcription factor 63 132 - -
Gabi3307g00012 243 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 182 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gabi3307g00012 243 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Gabi3307g00012 243 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Gabi3307g00012 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3307g00012 Gabi-Chr3307 111963 113557 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3307g00012 1 241 MYB Transcription Factor Family AT5G59780 55.556 1.75e-84 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3307g00012 Myb_DNA-binding 8.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3307g00012 K09422 - gmx:100776886 371.703