Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3307g00006 ATGTCTCCTGATTCTGCGAAGCCTGATGAACCTTCGCAATGGAAACCACGAGAAGTTTGTTCAATTATTATAGTATGCGTTCTCTTCCTCATAATAAGTTACTATGGCATATTTAAGCGTCTCTTATGTGAAATGTACCGAGCAAGCACCACTAGAAACCATGTTCAAAGGCGACTCCTAGATGAGTCTATTCCCAATGATCATTCTCTGCAGCTTCAAAGCATTGGATTGGAGTTATCTGTGGTACACTCTCTTCCCATATCTCAGTTTAAGAAAAATGAGGAAGATCATAAGCCAATAAACGTGGACTGTGCCATTTGCTTGGGAGAGTTTGAAGAAGGGGTATGGATAAAACATCTTCCAAACTGCACCCACGGCTTCCATGTTTCCTGCATTGACACATGGTTTCAGTCTCATTCAAATTGCCCTATCTGCAGATCTCATGTCTACCTTGACCTCCCTGCCAACTTAGAGTGTTCTGTATCTTCTTACACGTTGACAGAGAGTTTGAGGAGGGAAGACTTTATTCATGAAAGGGCTGCCCATTTTCAATCCATTCGCTCTGAAATTCTGGCTATTAGACAACAGTCTAGTCCTGGTTAA 603 0.4196 MSPDSAKPDEPSQWKPREVCSIIIVCVLFLIISYYGIFKRLLCEMYRASTTRNHVQRRLLDESIPNDHSLQLQSIGLELSVVHSLPISQFKKNEEDHKPINVDCAICLGEFEEGVWIKHLPNCTHGFHVSCIDTWFQSHSNCPICRSHVYLDLPANLECSVSSYTLTESLRREDFIHERAAHFQSIRSEILAIRQQSSPG 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3307g00006 200 Pfam Ring finger domain 103 146 IPR001841 -
Gabi3307g00006 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 150 IPR013083 -
Gabi3307g00006 200 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Gabi3307g00006 200 SMART ring_2 104 145 IPR001841 -
Gabi3307g00006 200 PANTHER RING-H2 FINGER PROTEIN ATL16 20 157 IPR044600 GO:0016567|GO:0016740
Gabi3307g00006 200 SUPERFAMILY RING/U-box 103 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3307g00006 Gabi-Chr3307 41690 42292 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3307g00006 72 149 Rapid Response to Elicitors AT3G16720 52.564 1.22e-20 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3307g00006 - - aprc:113859782 251.521