Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3306g00031 ATGGTGAAAATATCGGTTGGTGGATACGATGATGGGGAAGGACCAAGCAACCCGATCCAGAAAAGACAGAGGGTAGAAGAAGAAGAAGAAGAGGAGGAGGAAGAAGAAGAGCAGCAATTACAAGAAGGCTTTGAAACCGAAGAACCCTCAATTGAAGAAGAACAAGGAGACGACAACGCAACTGAAGAGCATCATCTTCCAGCCAATGCTGAAATCGTTGGATCATACCCTAACCCCCCAGAGAACAATAATGTGTCTGCATCGAATGATAGGAATAGGTCTATTTCTGTCACCGTTGTGGACCCTGATGTCCTTGATTGCTGCATTTGCTGTGAACCCTTGAGTGCTCCTATTTACCAGTGTGAGAATGGGCATATTGCTTGCTCTATTTGCTGTGTCAGACTTAGGAACAAGTGTGCCATGTGCTCAATGCCCATTGGCTATAACCGATGCCGAGCTATTGAGAAGGTGCTGGAATCTATTAAAATATCATGCCTGAATGCAAAATATGGCTGTAAAGAGATGTTTAGTTACAGTAGGAAATATGACCATGAGAAGGAGTGCATCTATCTACCATGTTTATGCCCGCATTCAGGTTGTGACTTTGTTGCCTCATCCAAGGAGTTATCCATCCACTTCAGTAACAGACATATAGATTCTGGAATACCGTTTATATATGATAAATTTAACACTGTCTTCTTAAATGTTGGCCAAAAAGCAGTTGTTCTTCAAGAGAAAAATGATGCTAATCTGTTTATTGTTCACAATCACCTTGAGCTTCTGGGGAATATAGTCCATATTGGTTGCATTGGCCCCAAATCGATGGCAGGGTTTCATTATGATGTCTTGGCTAGGTCTCAGGGAAGCACTCTAATATTGCAATCTTTTACCAAGATCATTCAAGGCCAAGTTGCTGACACTCCTTCAACAGGGTTCCTTTTGATTCCATGTGATTTTTTTGGTTCTGGACAACTCAAACTGGATATTCGCATAAGGTTACAACATCAAGCCTAG 1014 0.4191 MVKISVGGYDDGEGPSNPIQKRQRVEEEEEEEEEEEEQQLQEGFETEEPSIEEEQGDDNATEEHHLPANAEIVGSYPNPPENNNVSASNDRNRSISVTVVDPDVLDCCICCEPLSAPIYQCENGHIACSICCVRLRNKCAMCSMPIGYNRCRAIEKVLESIKISCLNAKYGCKEMFSYSRKYDHEKECIYLPCLCPHSGCDFVASSKELSIHFSNRHIDSGIPFIYDKFNTVFLNVGQKAVVLQEKNDANLFIVHNHLELLGNIVHIGCIGPKSMAGFHYDVLARSQGSTLILQSFTKIIQGQVADTPSTGFLLIPCDFFGSGQLKLDIRIRLQHQA 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3306g00031 337 CDD RING-HC_SIAHs 105 143 - -
Gabi3306g00031 337 SUPERFAMILY TRAF domain-like 160 332 - -
Gabi3306g00031 337 MobiDBLite consensus disorder prediction 27 57 - -
Gabi3306g00031 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 213 IPR013083 -
Gabi3306g00031 337 MobiDBLite consensus disorder prediction 71 90 - -
Gabi3306g00031 337 Pfam Seven in absentia protein family 150 245 IPR018121 GO:0005737|GO:0006511|GO:0007275
Gabi3306g00031 337 MobiDBLite consensus disorder prediction 1 61 - -
Gabi3306g00031 337 ProSiteProfiles Zinc finger SIAH-type profile. 160 218 IPR013010 GO:0008270
Gabi3306g00031 337 Coils Coil 19 46 - -
Gabi3306g00031 337 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 36 333 IPR044286 -
Gabi3306g00031 337 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3306g00031 Gabi-Chr3306 399595 402946 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3306g00031 103 217 C3H Transcription Factor Family AT2G41980 35.897 2.86e-20 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3306g00031 K04506 - gmx:100778869 427.943