Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3306g00028 ATGGCTACCATTTCTGCAAGTTGCTACCTCTTTGTTCCTATTCTTTTGTCGTTATGCCACATAACACTATGTGCAACAGTGATAGAAGACCTTAAAAACTTACACCAACCTCCAGATTTTAACTCTACAATTATGACCAACTGTCTCAAGAATCCATCTCTTAGGTACTGTAGTTCTTCTCCCACGGACCTTGATGAAATATTCAAATATACTATTGTTGCTAGCCATCTTTGCAATGAATCAAAGAACCCCAATTGTGTGGAGTCATTCCCTAAAGTTGATCTTAGAAACCGACCAAATGTTGCACCTCTTTATTTGTCATTTGATTTCTTTTGGAGGTATTGCCCCTTGAGCATTATGTCCATTGATTTGTCCAACAATTCTATGAAGGGTAGTTTTCCAATTGATGTTCTCTATTGCACCCAAATACAGGCTCTTGATTTAAGTATCAATGAGTTTTCTGGTGACATCCCAGTTCAAAGTTTCTCTCCTCTGACCAACCTCACTTTTCTTAACCTCTCCTATAATTGTTTTTCAGAGATTGACTTGTTTGATTCCCAATTCTTCAAAAGGTTTAATTCTTCTAGTTTTCTTCATTCTGGTGCTCTCCTGGATCACAAAAGGTTTACATTAAAGGCTATCATTCTATTGGTTGGCTTTCCCATCATTGTCATTTTGATGGTAATTTTCTTGGGATGGCTTTGTTTCCAAAGGCCTGATTTTCTACCAAGAAAATTTCAAAGACGTAGGAGGTTTACACCAGCAATTCTAAAGGCTGCAACTGCTGGTTTTTCTATTAAGAATTTGGTGGGGAAGAGTGATGTTGTTCATATCTACAAAGGGATCTTGAGAGATGGTACTGAAGTGAAAATTGAGATGTATTGGGATGATATATCAAGGGATAACTATCGTAAATTTGTTGAAGAATGTAAGGTTCTTTCTGAGTTACACCACAAGAACCTTGTTCGAGTTCTGGGGTGGTGCAGGAGCAGGAAATTCAGGGCTATTATTACAGAATGGACAAAAGAAGAGAATGTTGAAATGTGGTTATCAGGGTCAGCTCCAACATGGAATCATAGATTGAAAGTGTTAATGGGAGTTATAGAATGCATGCGTTATCTGCAAGAGGAATGGCCTGAAGTTGACTATGACCTCAAGACAAGTAGTGTTTTATTGTCTGAAAATATGGAACCATTAATTTCAAGGTTCAAAGTTGGAGATCAAAACAGCAGTCGAAGAAAGATATGTAAGTTTGGAGTTTTCCTGCTAGAGATGATACTAAACAAGAGGGTTGAAGAGGAGTTTGATGGAGGTGAAGCTGGATTTATTAGGTACATGAGAACCCTTCATCCTGTAGAGTTGCAGCAGATGATTGATGAGAAAATGGAAGTAACTGAAACAACTTTTCATCAAGTTAAACAGGTTCTATCCATAGGATTAATGTGCATAGACCAATCAAACAGTGAGCAGCCAAGTTTGGCCATGATATTTAATACTATAGCAAGAGCCTACAGGGCTAGCCTTGTTTTGCCATCTGCAAATCATAGAATATTTCATGGAGATAGATTTAAGGGACACATGCGCCTTCAATCCAGATAA 1599 0.379 MATISASCYLFVPILLSLCHITLCATVIEDLKNLHQPPDFNSTIMTNCLKNPSLRYCSSSPTDLDEIFKYTIVASHLCNESKNPNCVESFPKVDLRNRPNVAPLYLSFDFFWRYCPLSIMSIDLSNNSMKGSFPIDVLYCTQIQALDLSINEFSGDIPVQSFSPLTNLTFLNLSYNCFSEIDLFDSQFFKRFNSSSFLHSGALLDHKRFTLKAIILLVGFPIIVILMVIFLGWLCFQRPDFLPRKFQRRRRFTPAILKAATAGFSIKNLVGKSDVVHIYKGILRDGTEVKIEMYWDDISRDNYRKFVEECKVLSELHHKNLVRVLGWCRSRKFRAIITEWTKEENVEMWLSGSAPTWNHRLKVLMGVIECMRYLQEEWPEVDYDLKTSSVLLSENMEPLISRFKVGDQNSSRRKICKFGVFLLEMILNKRVEEEFDGGEAGFIRYMRTLHPVELQQMIDEKMEVTETTFHQVKQVLSIGLMCIDQSNSEQPSLAMIFNTIARAYRASLVLPSANHRIFHGDRFKGHMRLQSR 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3306g00028 532 Gene3D Transferase(Phosphotransferase) domain 1 342 502 - -
Gabi3306g00028 532 Gene3D Ribonuclease Inhibitor 36 208 IPR032675 -
Gabi3306g00028 532 Pfam Protein tyrosine and serine/threonine kinase 266 403 IPR001245 GO:0004672|GO:0006468
Gabi3306g00028 532 ProSiteProfiles Protein kinase domain profile. 264 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3306g00028 532 Gene3D Phosphorylase Kinase; domain 1 240 340 - -
Gabi3306g00028 532 ProSiteProfiles Leucine-rich repeat profile. 167 188 IPR001611 GO:0005515
Gabi3306g00028 532 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 118 181 - -
Gabi3306g00028 532 SUPERFAMILY L domain-like 65 188 - -
Gabi3306g00028 532 SUPERFAMILY Protein kinase-like (PK-like) 243 500 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3306g00028 Gabi-Chr3306 352004 353722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3306g00028 119 433 Receptor kinase-like Gene Family AT2G23950 26.790 4.78e-26 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gabi3306g00028 PK_Tyr_Ser-Thr 1.9e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3306g00028 - - gmx:100779045 910.983