Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3306g00027 ATGCGTAGATACCAAATAAAGAGAGGAAGGGATGGCATTTATGCTGGTTCTGGCTCTCAATTCAAACGCCCCTTTAGTTCCTCACGTGGTGATTCTTATGGCCAAACCCAAGTCCCTAGAGGAGGAGGAGGAAGAGGTAGTGTTGGTGGGGGAGAAACTACTTCCCTAAAACTGACTACCAATGATGCCTTATCCTATTTGAAGGAAGGGATAGACATGTTTCAGGAAAAAAGAGAAAAATATGACATGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAAAGGACTAACACGGCTGGTGTCATAGCATGGGTGAAGGAGCTATTCAAAAGGCACAACAATTTCATTTTTGGATTTAACACTTTCCTGCCAAAGGGATATGAGATAAACCTTGTCGAGGATGAGGCTCCTCCAAAGAAAACAGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTACAAATCGTTCTTGGACATTTTGAATATGTACAACAAAGAGCATAAGGACATCGGTGAAGTTTATAGTGAGGTTGCTACCCTGTTTAAGGATCATCGAGATTTGCTTGAGGAGTTCACTATATTCTTACCAGATACTTCTCATGATCGTGAGCGTGATCTGAGTGTTGAACACCCTGAGATGGATGGTGACAAAACAATGATGAACATGCACAAGGAGCAGAGGAAACGTGAGAGTAAGTATAGGAGGATTCGTGATCAGGATGACAGAGAACCTGATCTTGCTAACAGCAGGGATTTGAACTTGCAGCACTTTCCTGAGAAAAAGAAATCGGTCAAGAAGAATGAAGGTTTTGGGTTGGCTTCAGACTTTTCTTCTAATGAAGACAAGGATACCTTAAAGAACATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAACAGTGCTGATGACTACCAAGCTTTCTTGAAGTGCCTTCATATTTTCAGCAGTGGAATAATAAAAAGGAATGATTTGCAAAATTTTGTAACCGATTTACTTGGAAAGCATCCTGATCTTATGGAGGAATTCAATGATTTCCTGGAGCGTTGTGAAAATATTGATGGGTTCTTTGCTGGTGTCATGAGTAAAAAGTCATTGTCTTCTGATGGTCATTCATCAAGATCATCAAAGTTGGAGGACAAAGACAAAGAGATGAAGCGTGAGATGGATGGAGATAAAGAGAAGGAAAGATACAAGGAGAAGTACATGGGAGAATCCATTCAAGAACTTGACCTTAGTGACTGTAAAAGTTGCACTCCCAGTTACCGTTGTTGGCTTGTTGCCTTTTTCAGCGAGTGCTTTAACTTTGATAATCTTTGCTTAGAATTTAGTTGGCTTTTGTCATAA 1395 0.3986 MRRYQIKRGRDGIYAGSGSQFKRPFSSSRGDSYGQTQVPRGGGGRGSVGGGETTSLKLTTNDALSYLKEGIDMFQEKREKYDMFLEVMKDFKAQRTNTAGVIAWVKELFKRHNNFIFGFNTFLPKGYEINLVEDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLDILNMYNKEHKDIGEVYSEVATLFKDHRDLLEEFTIFLPDTSHDRERDLSVEHPEMDGDKTMMNMHKEQRKRESKYRRIRDQDDREPDLANSRDLNLQHFPEKKKSVKKNEGFGLASDFSSNEDKDTLKNMYSQAFSFCEKVKEKLNSADDYQAFLKCLHIFSSGIIKRNDLQNFVTDLLGKHPDLMEEFNDFLERCENIDGFFAGVMSKKSLSSDGHSSRSSKLEDKDKEMKREMDGDKEKERYKEKYMGESIQELDLSDCKSCTPSYRCWLVAFFSECFNFDNLCLEFSWLLS 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3306g00027 464 Pfam Paired amphipathic helix repeat 79 123 IPR003822 GO:0006355
Gabi3306g00027 464 Pfam Paired amphipathic helix repeat 163 207 IPR003822 GO:0006355
Gabi3306g00027 464 Pfam Paired amphipathic helix repeat 319 363 IPR003822 GO:0006355
Gabi3306g00027 464 ProSiteProfiles PAH domain profile. 140 210 IPR003822 GO:0006355
Gabi3306g00027 464 ProSiteProfiles PAH domain profile. 297 366 IPR003822 GO:0006355
Gabi3306g00027 464 FunFam Paired amphipathic helix protein Sin3 62 124 - -
Gabi3306g00027 464 MobiDBLite consensus disorder prediction 234 263 - -
Gabi3306g00027 464 MobiDBLite consensus disorder prediction 389 411 - -
Gabi3306g00027 464 MobiDBLite consensus disorder prediction 20 35 - -
Gabi3306g00027 464 MobiDBLite consensus disorder prediction 380 411 - -
Gabi3306g00027 464 FunFam Paired amphipathic helix protein SIN3 294 368 - -
Gabi3306g00027 464 Gene3D Paired amphipathic helix 62 124 IPR036600 GO:0006355
Gabi3306g00027 464 PANTHER SIN3B-RELATED 58 440 IPR039774 GO:0003714
Gabi3306g00027 464 SUPERFAMILY PAH2 domain 137 209 IPR036600 GO:0006355
Gabi3306g00027 464 FunFam Paired amphipathic helix SIN3-like protein 139 210 - -
Gabi3306g00027 464 Gene3D Paired amphipathic helix 139 211 IPR036600 GO:0006355
Gabi3306g00027 464 MobiDBLite consensus disorder prediction 1 55 - -
Gabi3306g00027 464 SUPERFAMILY PAH2 domain 300 366 IPR036600 GO:0006355
Gabi3306g00027 464 ProSiteProfiles PAH domain profile. 56 126 IPR003822 GO:0006355
Gabi3306g00027 464 SUPERFAMILY PAH2 domain 54 125 IPR036600 GO:0006355
Gabi3306g00027 464 Gene3D Paired amphipathic helix 295 368 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3306g00027 Gabi-Chr3306 337707 340001 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3306g00027 36 159 WRKY Transcription Factor Family AT4G12020 41.600 1.98e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi3306g00027 PAH 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3306g00027 K11644 - gmx:100807181 662.529