LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3306g00016	ATGGGTAGAGAAGAAAAACCCACAAAGATGGAAATTGATCTATCTTTGAAGATAGATTCTGATGATGAGCAAAAGGAAGAAGCAGCAAAAGTAGATGAGCGAATGAAAGAGGATGATGACAAGGAAGAAATGGCACGGATACCGGATAAGGAAGAAGTTCCTGAAGCCACAGCTGGTGAAATAGAAGATGATGCATCGGTGGTAGAAATATCTATGCAAGATAACACAAAAACAAGAGAGTTAAGTGTCTTACAAATGGAGATGGAGAGCATGAAAGAGGAAAACAAAGTGCTGAGGAAAGTTGTGGAACAAACAATGAAAGATTACTATGATTTGCAAATGAAATTTTCAGTCATTCAGGAAAACAATAAAAGAAAGGATCATCAAATTCCTCTCTCACTTCAAGGCAATGCAACCACCAACGGTGAAGGACCATCTAGAATTCTTGAGATCTTTAACACAAAAAATCAAAGAGCTCAATCCCCACCAAACACTGATGATAGTATAAGCGAAAGTGAATTGGGTTTATCACTAAGGTTGCAAACAAGAAGCACAAGTCATCAAAAAGAAACGGAGGGAAATTATAAGGAAGACAAAAACAAAGAACAATTGACAAATTTTGCATCAGAGATGAACAAATTACAGCGGAGAGATTGCTTGCCACGTATTACTACACATGCTGCCTCCCCTCCTAATAGAAAAGCTAGGGTTTCGGTTAGAGCAAGATGTGAGGCCGCCACAATGAATGATGGATGCCAATGGAGAAAATATGGACAGAAAATTGCAAAAGCAAATCCATGTCCACGAGCCTACTATCGTTGCACTGTAGCCCCAGGCTGCCCCGTTAGGAAACAGGTGCAAAGATGCATTGATGACATGTCAATACTAATTACAACCTATGAAGGAACACATAATCATCCACTCCCTGTGGGTGCAACTGCTATGGCTTCTTCAGCAGCAGCTTCCTATATGTTTTTAGAGTCAAGCAATCCTATTTCAGATAACACCTCTAGTTTTAACCAAGCATCACTTCCTTACAATAGCTTCCACTCATTAAACCCACCTTCCAATATTAGAAGCATAAACCCTAATGATCCATCCCAAGGGATTGTTCTTGATCTCACTAATAATCTCATGAGTGGTAGTAGCTCCTCCAATGCCACAACTGAGCCTCGTTTTTATTGGATGCCAAACAAATACCAGAGCAATGCTATTGCTATGAACAATTTTCACAACCCTAGACCAGTGGAACAATATCATGATAGGATTTGGAAAGGAGAAGAAGGTAAGCCTGCACTAGATGACAATGTTTCCACCATTGCCTCAGACCCTAATTTTAGGGTTGCTGTTGCAGCGGCAAAAGCATCAATGGTGAATAAAGAGAGCCACGCTACTCATCCTATTATAGGGACTTCTTTTGGTCCTAGGAGTGGGCAAAATGGTAGCTCTAGTAGTAAAAATTGGATCATAGAATCTCTCTCAACAAAAGGTAAGCCAACTTGA	1503	0.4019	MGREEKPTKMEIDLSLKIDSDDEQKEEAAKVDERMKEDDDKEEMARIPDKEEVPEATAGEIEDDASVVEISMQDNTKTRELSVLQMEMESMKEENKVLRKVVEQTMKDYYDLQMKFSVIQENNKRKDHQIPLSLQGNATTNGEGPSRILEIFNTKNQRAQSPPNTDDSISESELGLSLRLQTRSTSHQKETEGNYKEDKNKEQLTNFASEMNKLQRRDCLPRITTHAASPPNRKARVSVRARCEAATMNDGCQWRKYGQKIAKANPCPRAYYRCTVAPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASSAAASYMFLESSNPISDNTSSFNQASLPYNSFHSLNPPSNIRSINPNDPSQGIVLDLTNNLMSGSSSSNATTEPRFYWMPNKYQSNAIAMNNFHNPRPVEQYHDRIWKGEEGKPALDDNVSTIASDPNFRVAVAAAKASMVNKESHATHPIIGTSFGPRSGQNGSSSSKNWIIESLSTKGKPT	500

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3306g00016	500	Pfam	WRKY DNA -binding domain	249	307	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi3306g00016	500	FunFam	probable WRKY transcription factor 31	233	310	-	-
	Gabi3306g00016	500	SUPERFAMILY	WRKY DNA-binding domain	241	309	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gabi3306g00016	500	MobiDBLite	consensus disorder prediction	181	202	-	-
	Gabi3306g00016	500	MobiDBLite	consensus disorder prediction	185	202	-	-
	Gabi3306g00016	500	ProSiteProfiles	WRKY domain profile.	243	309	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi3306g00016	500	MobiDBLite	consensus disorder prediction	466	500	-	-
	Gabi3306g00016	500	MobiDBLite	consensus disorder prediction	472	500	-	-
	Gabi3306g00016	500	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	47	462	IPR044810	GO:0003700
	Gabi3306g00016	500	SMART	WRKY_cls	248	308	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi3306g00016	500	Gene3D	WRKY domain	233	310	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gabi3306g00016	500	MobiDBLite	consensus disorder prediction	155	174	-	-
	Gabi3306g00016	500	MobiDBLite	consensus disorder prediction	1	55	-	-
	Gabi3306g00016	500	MobiDBLite	consensus disorder prediction	1	60	-	-
	Gabi3306g00016	500	Coils	Coil	81	108	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3306g00016	Gabi-Chr3306	206548	208770	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3306g00016	10	369	WRKY Transcription Factor Family	AT1G68150	44.959	1.36e-83	261

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Gabi3306g00016		WRKY	8.1e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3306g00016	-		-	gmx:100820209	711.835