Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3302g00050 ATGGCTGTCACAGGTTCTGGTTCTTCTGGGCAGTCACAATTCATTTCAAGCACTGGGAACCGAAGCCTTTCGAATGCGCTGCTGATTGAGAATTCAGATACTGATCAAATTGTTGTACCTGATAAAAGAAGCTGGAAAAATTTATTTGCATACATGGGGCCCGGGTTTCTTGTTTCCATTGCATATATAGACCCAGGAAACTTCGAGACGGATCTTCAGTCTGGGGCACAATATAAATATGAGTTACTTTGGATCATATTGGTGGCGTCATGTGCTGCTCTTGTAATTCAATCAATGGCAGCCAATCTTGGGGTGGTCACCGGAAAGCACTTAGCAGAGCATTGTAGAACTGAATATCCCTGGGTGGCCAACTTTATCCTTTGGATTATTGCTGAAATTGCCATAGTGGCCTGTGACATTCCTGAAGTAATTGGGACAGCTTTTGCATTGAATATGCTCTTCAACATACCTGTTTGGGTTGGTGTTCTTCTGACAGGACTCAGCACATTGATCCTCTTGGCCTTGCAGCAATATGGGGTTAGGAAACTTGAATTCTTGATTGCATTTCTAGTATTTACAATTGCTGCTTGTTTTCTGGCTGAGCTTGGATATGCAAAGCCAGATGCTAAAGAGGTTCTGAAAGGTCTTTTTGTGCCAGAACTAAAAGGGAGTGGTGCTACTGGACTTGCAGTTTCACTCCTTGGAGCTATGGTTATGCCGCACAATCTCTTCCTGCACTCAGCACTGGTGCTTTCTAGGAAAATACCAAGATCAGTTCGGGGAATCAAAGAGGCTTGCAGATTTTACATGATAGAAAGTGCCTTTGCTCTCATGGTGGCCTTCCTCATAAATGTTTCTGTTATTTCTGTAAGTGGCACTGTTTGCAATTCTTTGAATTTGAATGCAGAAGATCAGATGAGCTGTCAGGATTTGGATCTCAACAAAGCCTCCTTTCTGCTTAGAAATGTCTTGGGGAAATGGAGTTCAAAACTGTTCGGAATTGCTTTGCTTGCATCAGGTCAAAGTTCTACTATTACAGGAACCTATGCAGGGCAGTACGTCATGCAGGGATTTCTTGATTTACGACTGGAGCCATGGATTCGAAATATGTTAACTCGTTGCTTAGCCATTGTTCCTAGTTTGATTGTTGCAGTCATTGGTGGCTCTGCTGGGGCTGGGAAGCTCATAATAATTGCATCAATGATCTTATCATTTGAACTTCCTTTTGCTTTGGTTCCACTCCTCAAGTTTACAAGCAGCAAAACTAAGATGGGGGCACATGTCAACTCTACCATGATTTCCGCAGTTACTTGGATAATTGGTTCCCTCATTATGGCCATTAATGTATACTATTTAATGACTGGCTTCATCAAGCTGCTTCTTCATAGTCACATAAAAATTGTGGCCAAGATATTTGTTGGGATATTAGGATTTTCAGGTATGGCAGTATATTTGGCTGGTATAGCATATCTAGTACTTCGCAAAAATGAAGAGGCCACACACCTTATGGCTCTAACAGCACCAGAGAGTCATCAAATGGCAAATGAACAAGGCAATGGGTCAATCTACTCTCTTTCAAGAGAAGACATAGTAAACATGCAATTGCCTCAAAGAAGTAGTACTGCAGATCTTGACTGA 1638 0.42 MAVTGSGSSGQSQFISSTGNRSLSNALLIENSDTDQIVVPDKRSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALVIQSMAANLGVVTGKHLAEHCRTEYPWVANFILWIIAEIAIVACDIPEVIGTAFALNMLFNIPVWVGVLLTGLSTLILLALQQYGVRKLEFLIAFLVFTIAACFLAELGYAKPDAKEVLKGLFVPELKGSGATGLAVSLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESAFALMVAFLINVSVISVSGTVCNSLNLNAEDQMSCQDLDLNKASFLLRNVLGKWSSKLFGIALLASGQSSTITGTYAGQYVMQGFLDLRLEPWIRNMLTRCLAIVPSLIVAVIGGSAGAGKLIIIASMILSFELPFALVPLLKFTSSKTKMGAHVNSTMISAVTWIIGSLIMAINVYYLMTGFIKLLLHSHIKIVAKIFVGILGFSGMAVYLAGIAYLVLRKNEEATHLMALTAPESHQMANEQGNGSIYSLSREDIVNMQLPQRSSTADLD 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3302g00050 545 PRINTS Natural resistance-associated macrophage protein signature 127 153 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi3302g00050 545 PRINTS Natural resistance-associated macrophage protein signature 230 253 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi3302g00050 545 PRINTS Natural resistance-associated macrophage protein signature 180 201 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi3302g00050 545 PRINTS Natural resistance-associated macrophage protein signature 340 359 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi3302g00050 545 PRINTS Natural resistance-associated macrophage protein signature 155 174 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi3302g00050 545 PRINTS Natural resistance-associated macrophage protein signature 400 419 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi3302g00050 545 PRINTS Natural resistance-associated macrophage protein signature 368 385 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi3302g00050 545 NCBIfam Nramp family divalent metal transporter 53 421 - -
Gabi3302g00050 545 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 31 499 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi3302g00050 545 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 47 424 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi3302g00050 545 Hamap Divalent metal cation transporter MntH [mntH]. 32 456 IPR001046 GO:0016020|GO:0030001|GO:0046873
Gabi3302g00050 545 Pfam Natural resistance-associated macrophage protein 68 430 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3302g00050 Gabi-Chr3302 491027 497644 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3302g00050 16 538 Inorganic Solute Cotransporters AT1G15960 79.810 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3302g00050 K21398 - gmx:100797298 943.725