Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3302g00049 ATGGATCCACAACACAAAACCAACAACAGGAACATCCTGTTCAACAAGTACGAGATTGGCAAGCTCCTAGGACAGGGAAACTTCTCTAAGGTTTACCATGGTCGAAACCTCATCACCAACGAGAGCGTTGCCATCAAGATCATCAAGAAAGAGAGGCTGAAGAAAGAGACCATGATGAAGCAAATCAAGCGCGAGGTTTCTGTTATGGGCCTCGTTCGCCACCCCCACATCGTGGAGCTCAGGGAAGTCATGGCCACCAAGGCCAAAATCTTCATGGTTGTCGAATACGTCAAAGGTGGCGAACTCTTCGCGAAGGTAACGAAGGGGAAGATGAGGGAAGACGAAGCAAGAAAGTACTTCCAACAACTCATCAGCGCCGTCGATTTCTGCCACAGCCGCGGCGTCACGCACCGTGATTTGAAGCCCGAGAATTTGCTCTTGGACGAGAACGAAGACCTTAAAGTCTCCGACTTTGGATTGTCGGCGTTGCCGGATCAGCGCAGATCCGACGGAATGCTCGTGACGCCGTGCGGAACGCCGGCGTATGTTGCGCCGGAGGTGCTGAAGAAGATAGGGTATGATGGGTCGAAGGCTGATATATGGTCGTGTGGTGTTATCCTCTATGCTTTGCTTTCTGGGTATTTGCCTTTTCAAGGTGAGAATGTGATGAGGATTTATAGAAAATCATTCAAAGCTGATTATGCATTCCCCGATTGGATTTCGACTGGTGCTAAGAATTTGATTTCGAAATTGCTCGTTGTTGATCCTGAGAAGAGGTATTCCATCCCTGATATCATGAAGGATCCTTGGTTTCAAATTGGGTTCATGAGACCCATTGCTTTTTCAATGAAGGAAACAGCTGTGGAAGATAACATTGATTTCAACGAGGATGATGATAATCATAACAATAGTCTTAATATTCTTGATGAATTGGTGGGGGAAAACCCAGTTCGTCCCTCTTACAATGCATTCGAGATTATATCTTCCTTGTCTCATGGGTTTGATCTTAGGAATTTGTTTGAGACGAGGAAGAGATCCCCTTCTATGTTCATTTCCAAGTTTTCAGGTTCTGCTGTGTTGGCGAAGCTTGAGACGGTGGCGAAGAAGCTGAATTTTAGGATAACGGGGAAGAAAGATTTCACGGTGAGAATGCAGGGGGCTAAAGAGGGAAGGAAGGGGAAACTGGCTATGACGGTGGAGGTGTTTGAGGTGGCGCCGGAGGTGGCGGTGGTGGAATTCTCAAAGTCCGCCGGAGACACGCTTGAATACATAAAGTTCTGTGAGGACCAAGTCAGACCTTCCCTTAAAGACATCGTCTGGACTTGGCAGGGTGATTCTCATCGCCATCATCAGTAG 1356 0.4742 MDPQHKTNNRNILFNKYEIGKLLGQGNFSKVYHGRNLITNESVAIKIIKKERLKKETMMKQIKREVSVMGLVRHPHIVELREVMATKAKIFMVVEYVKGGELFAKVTKGKMREDEARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPDQRRSDGMLVTPCGTPAYVAPEVLKKIGYDGSKADIWSCGVILYALLSGYLPFQGENVMRIYRKSFKADYAFPDWISTGAKNLISKLLVVDPEKRYSIPDIMKDPWFQIGFMRPIAFSMKETAVEDNIDFNEDDDNHNNSLNILDELVGENPVRPSYNAFEIISSLSHGFDLRNLFETRKRSPSMFISKFSGSAVLAKLETVAKKLNFRITGKKDFTVRMQGAKEGRKGKLAMTVEVFEVAPEVAVVEFSKSAGDTLEYIKFCEDQVRPSLKDIVWTWQGDSHRHHQ 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3302g00049 451 FunFam Aurora kinase A 9 100 - -
Gabi3302g00049 451 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3302g00049 451 FunFam Non-specific serine/threonine protein kinase 318 440 - -
Gabi3302g00049 451 ProSiteProfiles NAF domain profile. 316 341 IPR018451 GO:0007165
Gabi3302g00049 451 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 436 - -
Gabi3302g00049 451 Gene3D Kinase associated domain 1, KA1 322 441 - -
Gabi3302g00049 451 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3302g00049 451 FunFam Non-specific serine/threonine protein kinase 10 310 - -
Gabi3302g00049 451 Pfam NAF domain 320 375 IPR004041 GO:0007165
Gabi3302g00049 451 CDD CIPK_C 322 436 - -
Gabi3302g00049 451 Gene3D Transferase(Phosphotransferase) domain 1 8 321 - -
Gabi3302g00049 451 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524
Gabi3302g00049 451 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3302g00049 451 SUPERFAMILY Protein kinase-like (PK-like) 13 272 IPR011009 -
Gabi3302g00049 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3302g00049 Gabi-Chr3302 473245 475306 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3302g00049 10 447 CBL-interacting serine-threonine protein kinases AT5G10930 60.360 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi3302g00049 Pkinase 1.6e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3302g00049 - - gmx:100804244 733.791