Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3302g00041 ATGGCCATATCTCCGCCTGGGTTTATTGAAGGTTCAGTGAATATGGATGGGTACTTACTGGCATTATCATTGGGTCTCACCTCTATAATTAAATCCTTTTTAGATACACAATATACTTTTCACCTTTCCAAACTGAAGCTAAAGCTGCGATCTAGTATCATGACTCTAATCTATGAGAAGTGTCAATGTGTGAACCTAGCAGAGCGTTCCAAATTCTCAAATGGAGAAATTCAGACGTTCATGTCAGTGGATGCTGACCGAACTGTCAACTTGTGTAACAGTTTCCATGATATGTGGAGCCTGCCTTTACAAATTGGAGTGGCGCTTTATCTTTTGTATACTCAAGTCAAATTTGCATTTGTATCTGGATTAGCAATAACCATTTTGTTGATACCAGTGAATAAGTGGATATCAAAGTTGATTGCAAGTGCCACTGAGAAAATGATGAAGGAAAAGGATGAAAGGATTCGTAGGACAGGAGAACTTCTGACTTATATTCGCACTTTGAAGATGTATGGATGGGAACTTCTTTTTTCTAGTTGGTTGATGGAGACGAGATCTTTGGAAGTGAAACACTTAGCTACTCGGAAGTACTTGGATGCATGGTGTGTATTCTTTTGGGCTACAACACCAACACTTTTTTCTCTTTTCACATTTGGACTCTTTGCATTGATGGGACATCAACTTGATGCTGCAATGGTTTTCACTTGTCTTGCTTTGTTTAACACACTGATTTCACCACTGAATTCATTCCCTTGGGTGATAAATGGATTGATTGATGCCATTATATCCTCCAGACGGTTGAGTAGGTTTCTCTCTTGTCCTGAACATAAATTTAAAGTGGGAGAGACCAATTCATGTTCAACATCATTCCTGAGTAAACAGCCTGATTCTTTACAAGGTTTGGCTGTCTTTATGCAAGACGCATGTTGTACTTGGTCAAGCAGTGATGAACAAACATTAAATTTGGTGTTGAATCATGTGACTCTAAGCCTGTCCAAGGGCTCCTTTGTTGCAATTATTGGAGAGGTTGGTTCAGGCAAGTCATCCCTGTTATATTCAATTCTTGGAGAAATGCGGCTTGCTCATGGATCTATTTATTCTAACGGTTCCGTAGCCTATGTACCACAGGTCCCTTGGATTTTATCTGGAACAGTACGTGACAACATATTATTTGGGAAAAGCTATGATCCTGAAAGGTACACAGATACACTACATGCGTGTGCATTACATGTTGATATCTCATTGATGGTTGGAGGTGACATGGCTTATATTGGTGAGAAAGGAGTCAACTTATCAGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGCTACGTATCATGACTCAGATGTTGTTATGCTCGATGATGTCCTGAGTGCAGTTGATGTACAAGTAGCTCAGTGGATCTTACACAATGCCATTCGAGGTCCTCTTATGCAGGGCAAAACTCGATTGCTCTGTACCCACAACATTCAGGCTATATCTTCTGCTGATGTGATTGTTGTAATGGACAAGGGACACGTAAAGTGGATGGGAAGTTCAGCTGACTTTCCAATTTCTTCGTATACAGCATTCACCCCATTGAATGAAATTGATTCAGCTTTACACAATCATAAACAATCTTGTAGCATAAATCCTTCTTCCAAATCCAAGGAGCTGTCTCTTCCTGATAGAGTTATTATGCATACTCCGGAGGGAGCAGAGGATGTAATTGAAGTTGAGTTGAGGAAAGAGGGAAAAGTCGAACTTGGAGTGTATAAGAATTATGCTGTCTTCACTGGCTGGCTCATCACGGTTGTTATATGCCTGTCAGCTATTCTGATGCAAGCTTCTCGTAATGGAAATGATTTATGGCTATCTTATTGGGTTGATACAACAACAGAAAGCGGTCAAACAAGATACTCTCTGTCATTCTATCTGGCTATACTATGTCTCTTTTGTATTATGAATTCCTTTTTCACATTGGTGAGGGCATTCTCTTTTGCATTTGGTGGCTTACAAGCAGCAACTAAGGTACACAACAGACTCCTCAGCAAACTTATCAATGCACCTGTGCAGTTCTTTGATCAGACCCCAGGTGGAAGAATATTGAACAGGTTATCTTCAGATCTTTATACAATTGATGATTCTCTTCCATTCATTATGAACATTCTCCTAGCTAATTTTGTTGGCCTGTTGGGTATTGCAATAATTTTGTCTTATGTACAGGTCTTTTTCTTAGTCCTGCTATTGCCATTTTGGTATATCTACAGTAGACTTCAGTTCTTCTACAGGTCAACATCAAGAGAATTACGAAGACTGGACAGTGTTTCTCGTTCTCCAATATATACATCTTTCACCGAAACACTTGATGGATCATCGACTATTAGGGCGTTTAAATCTAAGGACTTTTTCTTTGCGAAATTCACTGATCATATGACATTGTATCAGAAGACTTCATACACAGAGATAGTGGCAAGTTTGTGGCTTTCCTTGCGTCTTCAGTTATTAGCTGCATTTATCATCTCGTTCATAGCTCTGCTGGCTGTTGTCGGATCTCATGGCAGACTGCCTATCAACTTTGGTACCCCAGGGCTGGTAGGATTAGCCCTCTCTTACGCAGCTCCAATTGTGTCCTTGTTGGGGAGTTTTTTAACAAGTTTCACTGAAACAGAAAAGGAAATGGTTTCAGTTGAAAGAGCCCTCCAATACATGGACATTCCACAAGAAGAACAAGCCGGATGCCTATGCTTGAATTCAGATTGGCCAAATCAAGGAGTTATTGAATTCCAGAATGTTACTTTGAAATATTTGCCATCTTTGCCAGCTGCACTCTGCAATCTTAGTTTTAGAATTGCAGGAGGGGCACAGGTTGGAATAATCGGAAGAACAGGTGCTGGAAAGTCTAGTGTGTTAAATGCCCTTTTCCGCCTTACCCCAATATGTACAGGCTCCATCACTGTTGATGGCATGGACATTAACAATATTCCTGTCAGAGAACTACGTGCACATTTGGCTATTGTTCCTCAGAGTCCATTCTTGTTTGAAGGATCATTAAGGGATAACCTAGATCCATTAAAAAAAATGGATGACTTGAAAATTTGGAATGCATTGGAGAAGTGCCATGTAAAAGAGGAAGTAGAAGTAGCTGGAGGGCTGGATATTCTTGTTAAGGAAGCGGGGCTGTCATTTTCTGTTGGCCAGCGGCAGCTTTTTTGTCTTGCACGTGCACTTCTCAAATCTTCGAAGGTTCTGTGTTTGGATGAGTGCACGGCCAATGTAGACATTCAAACTGCTTCACTGCTGCAAAGTACCATATCCAGTGAATGCGAAGGCATGACAGTGATTACAATTGCTCACCGGATTTCAACTGTTTTGAATATGGATAACATTCTGATTCTTGACCACGGGAACCTGGCTGAACAAGGAAATCCACAGGTTCTTCTGAAAGATGACTCCTCTATATTTTCTAGTTTTGTCAAAGCTTCATCAATGTAA 3480 0.406 MAISPPGFIEGSVNMDGYLLALSLGLTSIIKSFLDTQYTFHLSKLKLKLRSSIMTLIYEKCQCVNLAERSKFSNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWISKLIASATEKMMKEKDERIRRTGELLTYIRTLKMYGWELLFSSWLMETRSLEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLSCPEHKFKVGETNSCSTSFLSKQPDSLQGLAVFMQDACCTWSSSDEQTLNLVLNHVTLSLSKGSFVAIIGEVGSGKSSLLYSILGEMRLAHGSIYSNGSVAYVPQVPWILSGTVRDNILFGKSYDPERYTDTLHACALHVDISLMVGGDMAYIGEKGVNLSGGQRARLALARATYHDSDVVMLDDVLSAVDVQVAQWILHNAIRGPLMQGKTRLLCTHNIQAISSADVIVVMDKGHVKWMGSSADFPISSYTAFTPLNEIDSALHNHKQSCSINPSSKSKELSLPDRVIMHTPEGAEDVIEVELRKEGKVELGVYKNYAVFTGWLITVVICLSAILMQASRNGNDLWLSYWVDTTTESGQTRYSLSFYLAILCLFCIMNSFFTLVRAFSFAFGGLQAATKVHNRLLSKLINAPVQFFDQTPGGRILNRLSSDLYTIDDSLPFIMNILLANFVGLLGIAIILSYVQVFFLVLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKSKDFFFAKFTDHMTLYQKTSYTEIVASLWLSLRLQLLAAFIISFIALLAVVGSHGRLPINFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERALQYMDIPQEEQAGCLCLNSDWPNQGVIEFQNVTLKYLPSLPAALCNLSFRIAGGAQVGIIGRTGAGKSSVLNALFRLTPICTGSITVDGMDINNIPVRELRAHLAIVPQSPFLFEGSLRDNLDPLKKMDDLKIWNALEKCHVKEEVEVAGGLDILVKEAGLSFSVGQRQLFCLARALLKSSKVLCLDECTANVDIQTASLLQSTISSECEGMTVITIAHRISTVLNMDNILILDHGNLAEQGNPQVLLKDDSSIFSSFVKASSM 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3302g00041 1159 ProSitePatterns ABC transporters family signature. 1058 1072 IPR017871 GO:0005524|GO:0016887
Gabi3302g00041 1159 CDD ABCC_MRP_domain1 306 507 - -
Gabi3302g00041 1159 SUPERFAMILY ABC transporter transmembrane region 16 276 IPR036640 GO:0005524|GO:0016020
Gabi3302g00041 1159 FunFam ATP-binding cassette subfamily C member 10 7 277 - -
Gabi3302g00041 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 517 IPR027417 -
Gabi3302g00041 1159 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 304 531 IPR003439 GO:0005524
Gabi3302g00041 1159 FunFam ABC transporter C family member 13 286 541 - -
Gabi3302g00041 1159 Pfam ABC transporter 325 457 IPR003439 GO:0005524
Gabi3302g00041 1159 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 600 887 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3302g00041 1159 Gene3D ABC transporter type 1, transmembrane domain 5 276 IPR036640 GO:0005524|GO:0016020
Gabi3302g00041 1159 Pfam ABC transporter transmembrane region 19 248 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3302g00041 1159 Pfam ABC transporter transmembrane region 601 848 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3302g00041 1159 CDD ABC_6TM_MRP7_D1_like 7 268 - -
Gabi3302g00041 1159 ProSitePatterns ABC transporters family signature. 432 446 IPR017871 GO:0005524|GO:0016887
Gabi3302g00041 1159 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 8 260 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3302g00041 1159 Gene3D - 293 542 IPR027417 -
Gabi3302g00041 1159 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 16 1157 - -
Gabi3302g00041 1159 Pfam ABC transporter 940 1086 IPR003439 GO:0005524
Gabi3302g00041 1159 Gene3D - 909 1157 IPR027417 -
Gabi3302g00041 1159 SMART AAA_5 334 508 IPR003593 GO:0016887
Gabi3302g00041 1159 SMART AAA_5 948 1132 IPR003593 GO:0016887
Gabi3302g00041 1159 CDD ABC_6TM_MRP7_D2_like 599 899 - -
Gabi3302g00041 1159 FunFam ATP-binding cassette (ABC) transporter, putative 909 1156 - -
Gabi3302g00041 1159 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 922 1155 IPR003439 GO:0005524
Gabi3302g00041 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 916 1147 IPR027417 -
Gabi3302g00041 1159 FunFam ABC transporter C family member 5 563 905 - -
Gabi3302g00041 1159 Gene3D ABC transporter type 1, transmembrane domain 568 906 IPR036640 GO:0005524|GO:0016020
Gabi3302g00041 1159 SUPERFAMILY ABC transporter transmembrane region 596 904 IPR036640 GO:0005524|GO:0016020
Gabi3302g00041 1159 CDD ABCC_MRP_domain2 920 1139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3302g00041 Gabi-Chr3302 371572 396684 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3302g00041 324 557 Calmodulin-binding Proteins AT2G36910 26.482 7.27e-20 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3302g00041 K05674 - gmx:100814181 1994.55